View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3743_low_5 (Length: 811)
Name: NF3743_low_5
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 344 - 790
Target Start/End: Original strand, 32458961 - 32459400
Alignment:
| Q |
344 |
caatccttaaatcaccatgaaaataatgaggattgctttctatactctaatatttactcgacttttttgtcccagtaacaaaatgtcacccgcaaattgt |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||| |||||| | |||||||| |
|
|
| T |
32458961 |
caatccttaaatcaccatgaaaataatgaggattgctttcaatactctaacatttactcgacttttttctcctagtaacaaagtgtcactcacaaattgt |
32459060 |
T |
|
| Q |
444 |
aaatgcgcaaataaaagagnnnnnnnnnnnnnaacagcaacaaatacaactcgtttcattaataatgatgttctcaatataagatggcatataatcatga |
543 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32459061 |
aaatgcacaaataaaagagttttttt-------acagcaacaaatacaactcgtttcattaataatgatgttctcaatataagatggcatataatcatga |
32459153 |
T |
|
| Q |
544 |
atgtaggaattaacataagataatgacaccttaacttacaaatgaacaaacttatttatttgtttcataacgaaacttattttaaagttttggaaaagtg |
643 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32459154 |
atgtagaaattaacataagataatgacaccttaactcacaaatgaacaaacttatttatttgtttcataacgaaacttattttaaagttttggaaaagtt |
32459253 |
T |
|
| Q |
644 |
taagtaaagctttgcatatatcaagaatagattcaaacatgaaattggtatcgagattgttagaaatgttgtcaatcactttcttacaatcaattttaat |
743 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32459254 |
taagtaaatctttgcatatatcaagaatagattcaaacatgaaattggtatcgagattgttagaaatgttgtcaatcactttcttacaatcaattttaat |
32459353 |
T |
|
| Q |
744 |
agacaccttagataagcccacattaccaagccacttatggcttcctt |
790 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32459354 |
agacaccttagataagcccacattaccaagccacttatggcttcctt |
32459400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 32458409 - 32458743
Alignment:
| Q |
19 |
catagatgtgccacaaactctactttcacgtttttattaacttcttggtatcatttcaaagtttannnnnnnnn--caaaatcacttacacataattgag |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32458409 |
catagatgtgccacatactctactttcacgtttttattaacttcttggcatcatttcaaagttttttttttcttttcaaaatcacttacacataattgag |
32458508 |
T |
|
| Q |
117 |
aattaatcggaataatgccttagtgaaatagattaatcttcatagagatgtgattatggaacaaacgtcaagcaa------ttattttcaatacaacaat |
210 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
32458509 |
aattaaccggaataatgtcttagtgaaatagattaaccttcgtagagatgtgattatggaacaaacgtcaagtaaaaatagttgttttcaatacaacaat |
32458608 |
T |
|
| Q |
211 |
tttattccatataatgctagtaacttcttaacgaccactaggctccacggatgacaaccgatggtaaattccactaactatgtaacattcatttagcttt |
310 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32458609 |
tttattccatataatgctagtaacttcataacgaccactaagctccacggatgacaactgatggtaaattccactaactatgtaacattcatttagcttt |
32458708 |
T |
|
| Q |
311 |
ataagtcatgaatccctcaacctctgaatccccca |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
32458709 |
ataagtcatgaatccctcaacctctgaatccccca |
32458743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 670
Target Start/End: Complemental strand, 8295247 - 8295092
Alignment:
| Q |
515 |
tctcaatataagatggcatataatcatgaatgtaggaattaacataagataatgacaccttaacttacaaatgaacaaacttatttatttgtttcataac |
614 |
Q |
| |
|
|||||||| ||||||| |||| ||||||| |||| |||||||||||||||||||| || | ||||||| ||| ||||||||||| || ||| |
|
|
| T |
8295247 |
tctcaatacaagatggtatatgttcatgaacgtagagattaacataagataatgacaaatttgttagcaaatgagcaacactatttatttgtctcttaat |
8295148 |
T |
|
| Q |
615 |
gaaacttattttaaagttttggaaaagtgtaagtaaagctttgcatatatcaagaa |
670 |
Q |
| |
|
|||||||| |||||||||||| | | | ||||| |||||||||| |||||||||| |
|
|
| T |
8295147 |
aaaacttatcttaaagttttggcagattctaagtgaagctttgcaaatatcaagaa |
8295092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 570
Target Start/End: Complemental strand, 19920934 - 19920881
Alignment:
| Q |
517 |
tcaatataagatggcatataatcatgaatgtaggaattaacataagataatgac |
570 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||| | ||||||||||||| |
|
|
| T |
19920934 |
tcaatacaagatggcatataatcatgaatgtgggaactggtataagataatgac |
19920881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 519 - 635
Target Start/End: Original strand, 37923567 - 37923683
Alignment:
| Q |
519 |
aatataagatggcatataatcatgaatgtaggaattaacataagataatgacaccttaacttacaaatgaacaaacttatttatttgtttcataacgaaa |
618 |
Q |
| |
|
|||| |||||||||||||||||||| | |||| || |||||||||||||| || ||||| |||| || ||| |||||| ||||| || ||| |||| |
|
|
| T |
37923567 |
aatacaagatggcatataatcatgatcttgggaactagcataagataatgacgccctaactaacaagtgggcaacattatttgtttgtctcctaatgaaa |
37923666 |
T |
|
| Q |
619 |
cttattttaaagttttg |
635 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
37923667 |
cttatcttaaagttttg |
37923683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 635
Target Start/End: Complemental strand, 28284034 - 28283953
Alignment:
| Q |
554 |
taacataagataatgacaccttaacttacaaatgaacaaacttatttatttgtttcataacgaaacttattttaaagttttg |
635 |
Q |
| |
|
|||||||||||||||||||| | ||| |||| |||||| |||||| ||||| || ||| ||||||||| ||||||||||| |
|
|
| T |
28284034 |
taacataagataatgacaccctgactaacaagtgaacatcattatttgtttgtctcctaatgaaacttatcttaaagttttg |
28283953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 713 - 795
Target Start/End: Complemental strand, 5460846 - 5460763
Alignment:
| Q |
713 |
tgtcaatcactttcttacaatcaattttaatagacaccttagataagcccacattaccaagccac-ttatggcttcctttaatc |
795 |
Q |
| |
|
|||||| ||||| ||| ||||||||||| |||||||| ||||| || |||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
5460846 |
tgtcaaccacttgcttgcaatcaattttgatagacacattagacaaacccaagctaccaagccactttatcgcttcctttaatc |
5460763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 519 - 635
Target Start/End: Complemental strand, 23270194 - 23270078
Alignment:
| Q |
519 |
aatataagatggcatataatcatgaatgtaggaattaacataagataatgacaccttaacttacaaatgaacaaacttatttatttgtttcataacgaaa |
618 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||| || |||||||||||||| || || || |||| ||| ||| |||||| |||| | ||| |||| |
|
|
| T |
23270194 |
aatacaagatggcatataatcatgaacttgggaactagcataagataatgactccctagctaacaagtgagcaacattatttgcttgtcttctaatgaaa |
23270095 |
T |
|
| Q |
619 |
cttattttaaagttttg |
635 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
23270094 |
cttatcttaaagttttg |
23270078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 569
Target Start/End: Original strand, 38078177 - 38078254
Alignment:
| Q |
491 |
aactcgtttcattaataatgatgttctcaatataagatggcatataatcatgaatgtaggaattaacataagataatga |
569 |
Q |
| |
|
||||| ||||||||||||| || |||||||| |||||| ||||| ||||||||| | |||||| |||| ||||||||| |
|
|
| T |
38078177 |
aactcatttcattaataataattgtctcaatacaagatgacatatgatcatgaat-ttggaattgacatgagataatga |
38078254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University