View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3743_low_53 (Length: 237)

Name: NF3743_low_53
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3743_low_53
NF3743_low_53
[»] chr5 (5 HSPs)
chr5 (1-222)||(37829764-37829985)
chr5 (5-222)||(37841087-37841304)
chr5 (5-222)||(37848843-37849060)
chr5 (5-222)||(37835465-37835685)
chr5 (116-149)||(37506674-37506707)
[»] chr7 (2 HSPs)
chr7 (13-166)||(36864285-36864438)
chr7 (64-149)||(12281519-12281604)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37829985 - 37829764
Alignment:
Q  1 atacttccactgaatctgttctcagaaagatctaaattctgaagcaagctacagttgcttaactctgaaggcacgtttcctgagaaaccattaccgaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37829985 atacttccactgaatctgttctcagaaagatctaaattctgaagcaagctacagttgcttaactctgaaggcacgtttcctgagaaaccattaccgaaca 37829886  T
Q  101 acaaaaggttctgcaagtgataaaggttaccaatttctggtccaagttgaccaataatcccatgaccagtgaggctaagggaaatgacattataagtatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37829885 acaaaaggttctgcaagtgataaaggttaccaatttctggtccaagttgaccaataatcccatgaccagtgaggctaagggaaatgacattataagtatg 37829786  T
Q  201 gtcacattgaacaccaacccat 222  Q
    ||||||||||||||||||||||    
T  37829785 gtcacattgaacaccaacccat 37829764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 37841304 - 37841087
Alignment:
Q  5 ttccactgaatctgttctcagaaagatctaaattctgaagcaagctacagttgcttaactctgaaggcacgtttcctgagaaaccattaccgaacaacaa 104  Q
    ||||||||||||| |||| |||||| ||||||| || |||||| ||||| ||||||||||||||||| || ||||||| |||||||||||| ||||| |     
T  37841304 ttccactgaatctattcttagaaaggtctaaatactcaagcaaactacaattgcttaactctgaagggacatttcctgtgaaaccattacccaacaatac 37841205  T
Q  105 aaggttctgcaagtgataaaggttaccaatttctggtccaagttgaccaataatcccatgaccagtgaggctaagggaaatgacattataagtatggtca 204  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||   ||||||  ||| |||||||||||| |  |||||||||    
T  37841204 aaggttctgcaagtgataaaagtttccaatttctggtccaagttgaccaagaatcccatggttagtgagattaatggaaatgacattgttggtatggtca 37841105  T
Q  205 cattgaacaccaacccat 222  Q
    ||||||||||||||||||    
T  37841104 cattgaacaccaacccat 37841087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 37849060 - 37848843
Alignment:
Q  5 ttccactgaatctgttctcagaaagatctaaattctgaagcaagctacagttgcttaactctgaaggcacgtttcctgagaaaccattaccgaacaacaa 104  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| || ||||| |||||| ||||||| ||||||||    
T  37849060 ttccactgaatctgttctcagaaagctctaaattctgaagcaaactacagttacttaactctgaaggtacttttccggagaaagcattaccaaacaacaa 37848961  T
Q  105 aaggttctgcaagtgataaaggttaccaatttctggtccaagttgaccaataatcccatgaccagtgaggctaagggaaatgacattataagtatggtca 204  Q
    ||||||||| || |||||||| || || ||||||||||||||  |||||| |||||| |||| || |||| |||||||||| | ||| |  | |||||||    
T  37848960 aaggttctgtaaatgataaagatttcctatttctggtccaagccgaccaaaaatcccttgactagggaggttaagggaaattaaattgttggcatggtca 37848861  T
Q  205 cattgaacaccaacccat 222  Q
    ||| ||||||||||||||    
T  37848860 catcgaacaccaacccat 37848843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 37835685 - 37835465
Alignment:
Q  5 ttccactgaatctgttctcagaaagatctaaattctgaagcaagctacagttgcttaactctgaaggcacgtttcctgagaaaccattaccgaacaacaa 104  Q
    ||||||||||||| ||||||||||| ||||||| || |||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||| |     
T  37835685 ttccactgaatctattctcagaaaggtctaaatactcaagcaaactacagttgcttaactctgaaggcacttttcctgagaaaccatttccaaacaatac 37835586  T
Q  105 aaggttctgcaagtgataaaggttaccaatttctggtccaagttgaccaataatcccatgaccagtgaggctaagggaaatgacattataag---tatgg 201  Q
    |||| |||||||||||| ||||||   ||||||||  ||||||||||||| ||||||| ||| ||||||| |||| ||||||||||||| |    ||| |    
T  37835585 aagggtctgcaagtgatgaaggttcaaaatttctgtcccaagttgaccaaaaatcccacgactagtgaggttaagagaaatgacattatgatgattatag 37835486  T
Q  202 tcacattgaacaccaacccat 222  Q
    |||||||||||||||||||||    
T  37835485 tcacattgaacaccaacccat 37835465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 37506707 - 37506674
Alignment:
Q  116 agtgataaaggttaccaatttctggtccaagttg 149  Q
    ||||||||||||| ||||||||||||||||||||    
T  37506707 agtgataaaggtttccaatttctggtccaagttg 37506674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 36864438 - 36864285
Alignment:
Q  13 aatctgttctcagaaagatctaaattctgaagcaagctacagttgcttaactctgaaggcacgtttcctgagaaaccattaccgaacaacaaaaggttct 112  Q
    ||||| ||||||||||| ||||| ||||  ||||| |||||||||||||||||||||||||| ||||||||||||  |||||| ||||||||||| ||||    
T  36864438 aatctattctcagaaaggtctaacttctctagcaaactacagttgcttaactctgaaggcacctttcctgagaaattattaccaaacaacaaaagattct 36864339  T
Q  113 gcaagtgataaaggttaccaatttctggtccaagttgaccaataatcccatgac 166  Q
     ||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||    
T  36864338 ccaaatgataaaggtttccaatttctggtccaagttgaccaaaaatctcatgac 36864285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 12281604 - 12281519
Alignment:
Q  64 tctgaaggcacgtttcctgagaaaccattaccgaacaacaaaaggttctgcaagtgataaaggttaccaatttctggtccaagttg 149  Q
    ||||||||||| |||| |||||||||||| || ||||| | |||| ||||||||| || ||||||  |||||||||  ||||||||    
T  12281604 tctgaaggcacttttcttgagaaaccatttccaaacaatacaagggtctgcaagttatgaaggttcacaatttctgtcccaagttg 12281519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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