View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3743_low_59 (Length: 219)

Name: NF3743_low_59

Description: NF3743

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3743_low_59

[»] chr4 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 179; E-Value: 9e-97

Query Start/End: Original strand, 19 - 201

Target Start/End: Complemental strand, 329588 - 329406

Alignment:

Q	19	aagaaaaaaggaataaagatattagctagtaaaaatcatagaagggtttaatttgcttacaggagcaatcagcaaatgatggaatcaaactgaactgggc	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	329588	aagaaaaaaggaataaagatattagctagtaaaaatcatagaagggtttagtttgcttacaggagcaatcagcaaatgatggaatcaaactgaactgggc	329489	T

Q	119	tgaccttagagaacttcttgtccctttcgtagtcaaggcctggaggtgcattttgcaaagtcataagcagtacctggaaagtt	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	329488	tgaccttagagaacttcttgtccctttcgtagtcaaggcctggaggtgcattttgcaaagtcataagcagtacctggaaagtt	329406	T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 30; E-Value: 0.00000007

Query Start/End: Original strand, 134 - 187

Target Start/End: Original strand, 1202352 - 1202405

Alignment:

Q	134	tcttgtccctttcgtagtcaaggcctggaggtgcattttgcaaagtcataagca	187	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1202352	tcttgtctctttcataatcaagacctggaggggcattctgcaaagtcataagca	1202405	T

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