View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_low_6 (Length: 690)
Name: NF3743_low_6
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 636; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 21 - 680
Target Start/End: Original strand, 38180052 - 38180711
Alignment:
| Q |
21 |
tcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgttctttgaaag |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38180052 |
tcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatatagaacttgaatttgttctttgaaag |
38180151 |
T |
|
| Q |
121 |
attgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgt |
220 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180152 |
attgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgt |
38180251 |
T |
|
| Q |
221 |
ttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgat |
320 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38180252 |
ttcatcctttgatttgtttgtgacgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaactgttgcagcttgaatccataatagcgctgat |
38180351 |
T |
|
| Q |
321 |
gggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatga |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180352 |
gggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatga |
38180451 |
T |
|
| Q |
421 |
tatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcaga |
520 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180452 |
tatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcaga |
38180551 |
T |
|
| Q |
521 |
gaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatg |
620 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180552 |
gaaggtggcgaaggaaaggcccgagatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatg |
38180651 |
T |
|
| Q |
621 |
agacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
680 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180652 |
agacgtttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
38180711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 18 - 680
Target Start/End: Original strand, 38184718 - 38185380
Alignment:
| Q |
18 |
acatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgttctttga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184718 |
acatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactgtagggttggtttcttcatctagaacttgaatttgttctttga |
38184817 |
T |
|
| Q |
118 |
aagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaaca |
217 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184818 |
aagatcgagtagcgatagtatatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaaca |
38184917 |
T |
|
| Q |
218 |
tgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgct |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38184918 |
tgtttcatcctttgatttgtttgtgatgtagtcaccatgttcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgct |
38185017 |
T |
|
| Q |
318 |
gatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38185018 |
gatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagta |
38185117 |
T |
|
| Q |
418 |
tgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtc |
517 |
Q |
| |
|
|||||||||| |||||||| |||||| ||| ||||||||| || ||||| || |||||||||||||||||||| ||| || ||||||| ||| || |
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|
| T |
38185118 |
tgatatttgttagaaattctgagcagtggcacttaagctcggacctgtaggcgatgaagtcttcgttgctttcgaaatttttaccgtcgtcgtagccatc |
38185217 |
T |
|
| Q |
518 |
agagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaa |
617 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| ||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
38185218 |
agagaaggtggcgaaggagaggcctgggatggttggtttgttgataaggccagtgtgtaagtagatagttgtagcaaaagtgacttgtgcgccgaaagaa |
38185317 |
T |
|
| Q |
618 |
atgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
680 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38185318 |
atgagacgcttggcgaattggagtgcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
38185380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 44 - 680
Target Start/End: Original strand, 38170261 - 38170897
Alignment:
| Q |
44 |
ttcaaactcttcaacggtgttaacaagtactttagggttggtttcttcat-ctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatat |
142 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| | |||||| ||||||||| | | |||| ||||||| ||||||| |||| || ||| | ||||||| | |
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|
| T |
38170261 |
ttcaaactcctcaacggtgttcacaagtactcttgggttgatttcttcattcaacaact-gaatttgctctttgagagatggaagagcaaaagtgtatgt |
38170359 |
T |
|
| Q |
143 |
atttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtg |
242 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||| |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
38170360 |
atttgaagccaataaaaaagagggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgtg |
38170459 |
T |
|
| Q |
243 |
atgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgcca |
342 |
Q |
| |
|
||||||||||| || |||||||||||||||||| | |||||||| |||||||| ||||||||||| || || | ||||||||||||||||||| |||||| |
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|
| T |
38170460 |
atgtagtcaccgtgttcatgaaagtaataatagaatatatcaaacaccgttgctgcttgaatccacaacagtgttgatgggaggtgaagctcatgtgcca |
38170559 |
T |
|
| Q |
343 |
cctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagca |
442 |
Q |
| |
|
|||| | |||| | || |||| | |||| |||||||||||||||| || ||| |||||| |||||| |||||||||||||||||||| |||| |
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|
| T |
38170560 |
ccttgggagcccatgaaagtatgagagtgtagattaagcaagtgaatggatgattttcttgtttggaggagagaatgatatttgtgagaaattctgagcc |
38170659 |
T |
|
| Q |
443 |
gcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggccc |
542 |
Q |
| |
|
||| ||| ||| |||| || ||||| ||| | |||||||| || | ||||| | || ||||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
38170660 |
gcgacgcgtaaactcagacatgtaggagacgatgtcttcgtcgccaaaggatttttgaccgtcgtcatagccgtcagagaaggtggcgaaggagaggccc |
38170759 |
T |
|
| Q |
543 |
gggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagag |
642 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | |
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|
| T |
38170760 |
gggatggttggtttgttgataaggcgactgtataagtggatagtggtagcaaaagtgacttttgcgcccaaagaaatgagacgcttggtgaattggaggg |
38170859 |
T |
|
| Q |
643 |
cagggtttatgtgaccgtgtagtgggtatgtgatgatg |
680 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
38170860 |
cagggtttatgtgaccttgtagtgggtatgttatgatg |
38170897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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