View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_low_60 (Length: 211)
Name: NF3743_low_60
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 43228284 - 43228372
Alignment:
| Q |
106 |
gaaatggaaaagaaagaaaagaagttaaatctaatggaacaacacatgttcattgctactagattgttactatatatgcagtggacagt |
194 |
Q |
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| T |
43228284 |
gaaatggaaaagaaagaaaagaagttaaatctaatggaacaacacatgttcattgctactagattgttactatatatgcagtggacagt |
43228372 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 41649874 - 41649784
Alignment:
| Q |
106 |
gaaatggaaaagaaagaaaagaagttaaatctaatggaacaacacatgttcattgct-actagattgttactatatat--gcagtggacagt |
194 |
Q |
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| T |
41649874 |
gaaatggaaaagaaaaaaaagaagttaaatcaaatggaacaacgcatattcattgctcactaga-tgttactatatataagcagtggacagt |
41649784 |
T |
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