View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3743_low_8 (Length: 530)
Name: NF3743_low_8
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3743_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 43147529 - 43147245
Alignment:
| Q |
1 |
ctttgtataggttctaagagagaggtctagatcgtatcattacataatattttacacactttaagagagaattttacatacttctttgtcctgcatacat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43147529 |
ctttgtataggttctaagagagagttctagatcgtatcattacataatattttacacactttaagagagaattttacatacttctttgtcctgcatacat |
43147430 |
T |
|
| Q |
101 |
gtaatactatttaaatatggtgtatcattcaacttgattcatataggatattttgatgccgtttcatctattttgccaaccttgcctagtttgctttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43147429 |
gtaatactatttaaatatggtgtatcattcaacttgattcgtataggatattttgatgccgtttcatctattttgccaaccttgcctagtttgctttctt |
43147330 |
T |
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| Q |
201 |
caaaaattgtttgacacaacttctcttaaggagtagaaaatgtcggcaataagctgggccaaacactcccataatgcactcaact |
285 |
Q |
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| T |
43147329 |
caaaaattgtttgacacaacttctcttaaggagtagaaaatgtcggcaataagctgggccaaacactcccataatgcactcaact |
43147245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 426 - 520
Target Start/End: Complemental strand, 43147104 - 43147010
Alignment:
| Q |
426 |
aacacaaaaatttggtaacacagttcagagtaaagttgacttctatgtaattttatacgtcttttctatatttgttttataataacttcattcat |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43147104 |
aacacaaaaatttggtaacacagttcagagtaaagttgacttctatataattttatacgtcttttctatatttgttttataataacttcattcat |
43147010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 114 - 285
Target Start/End: Complemental strand, 39362893 - 39362723
Alignment:
| Q |
114 |
aatatggtgtatcattcaacttgattcatataggatattttgatgccgtttcatctattttgccaaccttgcctagtttgctttcttcaaaaattgtttg |
213 |
Q |
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| T |
39362893 |
aatatggtgcatcattcaacttgattcatataggatattttgatgccgtttcatctattttgccaaccttgcctactgtgctttcttcaaaaattgtatg |
39362794 |
T |
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| Q |
214 |
acacaacttctcttaaggagtagaaaatgtcggcaataagctgggccaaacactcccataatgcactcaact |
285 |
Q |
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|||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39362793 |
gcacaacttctcttaaggactagaaaa-gtcagcaataagctgggccaaacactcccataatgcactcaact |
39362723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 460 - 518
Target Start/End: Complemental strand, 39362631 - 39362573
Alignment:
| Q |
460 |
gttgacttctatgtaattttatacgtcttttctatatttgttttataataacttcattc |
518 |
Q |
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|||||||||||| || ||||| ||||||||||||||||||||| || |||||||||||| |
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| T |
39362631 |
gttgacttctatttagttttacacgtcttttctatatttgtttcatgataacttcattc |
39362573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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