View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3743_low_9 (Length: 498)

Name: NF3743_low_9
Description: NF3743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3743_low_9
NF3743_low_9
[»] chr4 (25 HSPs)
chr4 (24-428)||(26150348-26150752)
chr4 (433-482)||(32990527-32990577)
chr4 (433-482)||(34844813-34844863)
chr4 (433-482)||(40058907-40058957)
chr4 (433-482)||(44343606-44343656)
chr4 (433-482)||(52983711-52983761)
chr4 (433-482)||(18875572-18875621)
chr4 (445-482)||(20078052-20078089)
chr4 (433-482)||(55961809-55961858)
chr4 (432-482)||(5609256-5609307)
chr4 (432-482)||(45787758-45787809)
chr4 (433-482)||(21387540-21387590)
chr4 (433-482)||(27528850-27528900)
chr4 (433-482)||(33696334-33696384)
chr4 (433-482)||(33992718-33992768)
chr4 (433-482)||(34723891-34723941)
chr4 (433-482)||(35674796-35674846)
chr4 (433-482)||(54127397-54127447)
chr4 (445-482)||(9517709-9517746)
chr4 (441-482)||(13550300-13550341)
chr4 (445-482)||(13584322-13584359)
chr4 (433-481)||(19660587-19660636)
chr4 (447-480)||(20566444-20566477)
chr4 (446-482)||(12500127-12500163)
chr4 (450-482)||(25852306-25852338)
[»] chr3 (36 HSPs)
chr3 (193-428)||(47326788-47327023)
chr3 (433-480)||(24165770-24165817)
chr3 (433-482)||(1242065-1242115)
chr3 (433-482)||(15566555-15566604)
chr3 (433-482)||(52821691-52821740)
chr3 (432-482)||(10190796-10190847)
chr3 (433-483)||(18176942-18176993)
chr3 (433-482)||(8097334-8097384)
chr3 (433-482)||(8456205-8456255)
chr3 (433-482)||(25289769-25289819)
chr3 (433-482)||(26108384-26108434)
chr3 (433-482)||(34492630-34492680)
chr3 (433-482)||(35493003-35493053)
chr3 (433-482)||(40133504-40133554)
chr3 (298-392)||(43074708-43074802)
chr3 (433-482)||(46576440-46576490)
chr3 (433-482)||(7470271-7470320)
chr3 (445-482)||(10083887-10083924)
chr3 (445-482)||(25379853-25379890)
chr3 (445-482)||(30807221-30807258)
chr3 (181-230)||(43074591-43074640)
chr3 (433-481)||(48977481-48977530)
chr3 (445-482)||(49258330-49258367)
chr3 (446-482)||(45529823-45529859)
chr3 (447-482)||(21363035-21363070)
chr3 (433-483)||(30257715-30257766)
chr3 (432-482)||(4462725-4462775)
chr3 (433-482)||(39041907-39041957)
chr3 (445-483)||(40940916-40940954)
chr3 (433-482)||(45272471-45272521)
chr3 (433-482)||(53233965-53234015)
chr3 (437-483)||(53288772-53288818)
chr3 (445-482)||(25344125-25344162)
chr3 (433-482)||(29915325-29915374)
chr3 (433-482)||(29964478-29964527)
chr3 (434-482)||(53424233-53424281)
[»] chr2 (21 HSPs)
chr2 (433-483)||(13266581-13266631)
chr2 (302-398)||(38907212-38907308)
chr2 (433-482)||(3943832-3943882)
chr2 (432-481)||(4769259-4769309)
chr2 (433-482)||(35171892-35171942)
chr2 (432-482)||(41314084-41314134)
chr2 (442-482)||(19517034-19517074)
chr2 (446-482)||(27290680-27290716)
chr2 (446-482)||(33827642-33827678)
chr2 (446-481)||(11941279-11941314)
chr2 (445-483)||(28668964-28669002)
chr2 (433-482)||(30466885-30466935)
chr2 (433-482)||(36242367-36242417)
chr2 (448-482)||(45271476-45271510)
chr2 (441-482)||(1191605-1191646)
chr2 (433-482)||(10582046-10582095)
chr2 (433-482)||(17324858-17324907)
chr2 (433-482)||(24196096-24196144)
chr2 (433-482)||(34516469-34516518)
chr2 (445-482)||(44976222-44976259)
chr2 (446-482)||(44946122-44946158)
[»] chr5 (20 HSPs)
chr5 (433-482)||(19456266-19456315)
chr5 (433-481)||(6014335-6014384)
chr5 (434-482)||(38684300-38684348)
chr5 (433-482)||(7085681-7085731)
chr5 (433-482)||(15641160-15641210)
chr5 (433-482)||(15931150-15931200)
chr5 (433-482)||(32059495-32059545)
chr5 (433-482)||(34049903-34049953)
chr5 (433-482)||(11464963-11465012)
chr5 (445-482)||(11926570-11926607)
chr5 (446-482)||(34310234-34310270)
chr5 (432-482)||(4603869-4603920)
chr5 (432-482)||(5049229-5049279)
chr5 (433-482)||(8484716-8484766)
chr5 (445-483)||(27487623-27487661)
chr5 (433-482)||(27498786-27498836)
chr5 (448-482)||(30485920-30485954)
chr5 (433-482)||(35425105-35425155)
chr5 (448-482)||(37495139-37495173)
chr5 (449-482)||(25587024-25587057)
[»] chr1 (17 HSPs)
chr1 (179-264)||(38547378-38547463)
chr1 (433-482)||(4621292-4621342)
chr1 (433-482)||(15059457-15059507)
chr1 (433-482)||(24122115-24122165)
chr1 (432-482)||(32930841-32930892)
chr1 (432-482)||(1378990-1379040)
chr1 (433-482)||(24674485-24674535)
chr1 (446-482)||(27454935-27454971)
chr1 (433-480)||(32729638-32729686)
chr1 (447-482)||(9500425-9500460)
chr1 (433-480)||(40802124-40802171)
chr1 (433-482)||(7766782-7766832)
chr1 (433-482)||(8077739-8077789)
chr1 (433-482)||(17935861-17935911)
chr1 (433-482)||(7946936-7946985)
chr1 (445-482)||(45331690-45331727)
chr1 (432-479)||(12876990-12877038)
[»] chr8 (20 HSPs)
chr8 (433-482)||(8765581-8765631)
chr8 (433-482)||(4718741-4718791)
chr8 (433-482)||(15259461-15259511)
chr8 (433-482)||(39349352-39349402)
chr8 (445-482)||(3734691-3734728)
chr8 (445-482)||(19471705-19471742)
chr8 (445-482)||(19542629-19542666)
chr8 (445-482)||(19590030-19590067)
chr8 (433-482)||(27746391-27746440)
chr8 (445-482)||(34237723-34237760)
chr8 (445-482)||(42328100-42328137)
chr8 (446-482)||(20306004-20306040)
chr8 (446-482)||(21092637-21092673)
chr8 (446-482)||(24018478-24018514)
chr8 (445-481)||(28193571-28193607)
chr8 (447-482)||(2618282-2618317)
chr8 (433-482)||(21603326-21603376)
chr8 (449-482)||(6953079-6953112)
chr8 (449-482)||(20470013-20470046)
chr8 (450-482)||(2166793-2166825)
[»] chr6 (13 HSPs)
chr6 (433-482)||(654201-654251)
chr6 (433-482)||(3222691-3222740)
chr6 (433-482)||(21148566-21148615)
chr6 (433-482)||(11448963-11449013)
chr6 (433-482)||(21982375-21982425)
chr6 (445-482)||(9690706-9690743)
chr6 (445-482)||(12591729-12591766)
chr6 (445-482)||(15360166-15360203)
chr6 (446-482)||(34147438-34147474)
chr6 (446-482)||(34160054-34160090)
chr6 (433-482)||(12390517-12390567)
chr6 (446-482)||(1345027-1345063)
chr6 (445-481)||(9844031-9844067)
[»] chr7 (25 HSPs)
chr7 (433-482)||(654760-654809)
chr7 (433-482)||(31274010-31274059)
chr7 (433-482)||(10091284-10091334)
chr7 (433-482)||(17197005-17197055)
chr7 (433-482)||(21835247-21835297)
chr7 (433-482)||(22119984-22120034)
chr7 (433-482)||(40542965-40543015)
chr7 (445-482)||(2751367-2751404)
chr7 (445-482)||(18044203-18044240)
chr7 (445-482)||(23092192-23092229)
chr7 (432-482)||(21373806-21373857)
chr7 (433-482)||(2103151-2103201)
chr7 (433-482)||(3851853-3851903)
chr7 (433-482)||(7275373-7275423)
chr7 (433-482)||(29861766-29861816)
chr7 (449-482)||(7175934-7175967)
chr7 (441-482)||(9683922-9683963)
chr7 (445-482)||(9718055-9718092)
chr7 (433-482)||(14199722-14199771)
chr7 (445-482)||(23012576-23012613)
chr7 (445-482)||(27009455-27009492)
chr7 (445-482)||(36772371-36772408)
chr7 (446-482)||(21217902-21217938)
chr7 (446-482)||(22703582-22703618)
chr7 (432-483)||(43785353-43785405)
[»] scaffold1175 (1 HSPs)
scaffold1175 (433-482)||(2481-2531)
[»] scaffold0459 (1 HSPs)
scaffold0459 (432-482)||(10748-10798)
[»] scaffold0366 (2 HSPs)
scaffold0366 (432-482)||(12055-12105)
scaffold0366 (432-482)||(9353-9404)
[»] scaffold0070 (1 HSPs)
scaffold0070 (433-482)||(40417-40467)
[»] scaffold0068 (1 HSPs)
scaffold0068 (433-482)||(41699-41749)
[»] scaffold0576 (1 HSPs)
scaffold0576 (445-482)||(5150-5187)
[»] scaffold0623 (1 HSPs)
scaffold0623 (432-482)||(1110-1161)
[»] scaffold0217 (1 HSPs)
scaffold0217 (433-482)||(7364-7414)
[»] scaffold0157 (1 HSPs)
scaffold0157 (446-482)||(20314-20350)
[»] scaffold0051 (1 HSPs)
scaffold0051 (445-477)||(52939-52971)
[»] scaffold0026 (1 HSPs)
scaffold0026 (446-482)||(97435-97471)
[»] scaffold0016 (1 HSPs)
scaffold0016 (450-482)||(32380-32412)


Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 24 - 428
Target Start/End: Complemental strand, 26150752 - 26150348
Alignment:
Q  24 ttaagttatgaggcgagtatatgttagacaaaagtggagtggtcatacatgtggggagtataagttatattagtgagtgttgtgataagctcctcgttgg 123  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  26150752 ttaagttatgaggtgagtatatgttagacaaaagtggagtggtcatacatgtgggaagtataagttatattagtgagtgtggtgataagctcctcgttgg 26150653  T
Q  124 ttactacattctctccttaactttagtcgttgctacaaagttaatctagaacactcttcctcccctttcttatctaaattcaccaaatccttccaccact 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  26150652 ttactacattctctccttaactttagtcgttgctacaaagttaatctagaacacccgtcctcccctttcttatctaaattcaccaaatccttccaccact 26150553  T
Q  224 tagaagcatttgttggacaaaagtcctcccctccttccaacatcgcgcacactttcctcccataccgttcctcaagcacctccttccaatgagcgttatc 323  Q
    |||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26150552 tagaagcatttgttggacaaaagtcctcccctccctccaacttcgcacacactttcctcccataccgttcctcaagcacctccttccaatgagcgttatc 26150453  T
Q  324 cccgtacaataatctccaccgccacttcgctagcaagctcaagttcatcaaccacacatccttaaccccaagacctccacactcctttggttgaaacacc 423  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26150452 cccgtacaataacctccaccgccacttagctagcaagctcaagttcatcaaccacacatccttaaccccaagacctccacactcctttggttgaaacacc 26150353  T
Q  424 acact 428  Q
    |||||    
T  26150352 acact 26150348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 32990577 - 32990527
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  32990577 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 32990527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 34844813 - 34844863
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  34844813 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 34844863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 40058907 - 40058957
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  40058907 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 40058957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 44343656 - 44343606
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||| |||||||||||| ||||||| |||||||||||||||||    
T  44343656 ccacttgcgggagccccgtttaaagtcagagcaagctctgtatggacttag 44343606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 52983761 - 52983711
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  52983761 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 52983711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 18875572 - 18875621
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||| |||  ||||||||||||||||||| |||||||||||||||||    
T  18875572 ccacttgtgggggcccgtttaaagccagagcaagctctgtatggacttag 18875621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 20078052 - 20078089
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  20078052 ccccgtttaaagccagagcaagctctgtatggacttag 20078089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 55961809 - 55961858
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||| ||| |||||||||||| ||||||| |||||||||||||||||    
T  55961809 ccacttgtggggccccgtttaaagtcagagcaagctctgtatggacttag 55961858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 5609256 - 5609307
Alignment:
Q  432 tccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||  |||| ||||||||||||||| |||||||||||||||||    
T  5609256 tccacttgcgggggccccatttaaagccagagcaagctctgtatggacttag 5609307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 45787758 - 45787809
Alignment:
Q  432 tccacttgcgggacccc-gtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||  ||| |||||||||||||||| |||||||||||||||||    
T  45787758 tccacttgcgggggccctgtttaaagccagagcaagctctgtatggacttag 45787809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 21387540 - 21387590
Alignment:
Q  433 ccacttgcggg-accccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||| | ||||||||||||||||||| ||||||||| |||||||    
T  21387540 ccacttgcggggatcccgtttaaagccagagcaagctctgtatagacttag 21387590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 27528850 - 27528900
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||| ||||||||||||| |||||||||||||||||    
T  27528850 ccacttgcgggggccccgtataaagccagagcaagctctgtatggacttag 27528900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 33696334 - 33696384
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||| ||||||||||||||| |||||||||||||||||    
T  33696334 ccacttgcgggggccccatttaaagccagagcaagctctgtatggacttag 33696384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 33992768 - 33992718
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| ||| |||||||||||||    
T  33992768 ccacttgcgggggccccgtttaaagccagagcaagctatgtatggacttag 33992718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 34723941 - 34723891
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| ||| |||||||||||||    
T  34723941 ccacttgcgggggccccgtttaaagccagagcaagctttgtatggacttag 34723891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 35674796 - 35674846
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||| ||||||| |||||||||||||||||    
T  35674796 ccacttgcgggggccccgtttaaaggcagagcaagctctgtatggacttag 35674846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 54127397 - 54127447
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| ||||||||| |||||||    
T  54127397 ccacttgcgggggccccgtttaaagccagagcaagctctgtatagacttag 54127447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 9517709 - 9517746
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  9517709 ccccgtttaaagtcagagcaagctctgtatggacttag 9517746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Complemental strand, 13550341 - 13550300
Alignment:
Q  441 gggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||||| | |||| ||||||||||||    
T  13550341 gggaccccgtttaaagccagagtaagctcggtatggacttag 13550300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 13584322 - 13584359
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  13584322 ccccgtttaaagccagagcaagctctctatggacttag 13584359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 481
Target Start/End: Original strand, 19660587 - 19660636
Alignment:
Q  433 ccacttgcgggacccc-gtttaaagccagagcaggctctgtatggactta 481  Q
    |||||||||||  ||| |||||||||||||||| ||||||||||||||||    
T  19660587 ccacttgcgggggccctgtttaaagccagagcaagctctgtatggactta 19660636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 480
Target Start/End: Complemental strand, 20566477 - 20566444
Alignment:
Q  447 ccgtttaaagccagagcaggctctgtatggactt 480  Q
    |||||||||||||||||| |||||||||||||||    
T  20566477 ccgtttaaagccagagcaagctctgtatggactt 20566444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 482
Target Start/End: Original strand, 12500127 - 12500163
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  12500127 cccgtttaaagccagagcaagctatgtatggacttag 12500163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 25852338 - 25852306
Alignment:
Q  450 tttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||| |||||||||||||||||    
T  25852338 tttaaagccagagcaagctctgtatggacttag 25852306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 428
Target Start/End: Complemental strand, 47327023 - 47326788
Alignment:
Q  193 ttatctaaattcaccaaatccttccaccacttagaagcatttgttggacaaaagtcctcccctccttccaacatcgcgcacactttcctcccataccgtt 292  Q
    ||||||| |||||||||||||||||||||||| ||||||||       ||| ||||| |||| ||||||||  | | ||| || | ||||||||| |  |    
T  47327023 ttatctagattcaccaaatccttccaccacttggaagcattacgcatgcaatagtcccccccaccttccaatttagtgcaaacctccctcccatatctct 47326924  T
Q  293 cctcaagcacctccttccaatgagcgttatccccgtacaataatctccaccgccacttcgctagcaagctcaagttcatcaaccacacatccttaacccc 392  Q
    |||||||||||||||||||| |||| |  || || | ||| || ||||||| |||||| |||| ||||||||| |||||||| | ||||||||| |||||    
T  47326923 cctcaagcacctccttccaaagagcatcttcaccattcaacaacctccacctccacttggctaacaagctcaaattcatcaatctcacatcctttacccc 47326824  T
Q  393 aagacctccacactcctttggttgaaacaccacact 428  Q
     ||||| ||    ||||| |||||| ||||||||||    
T  47326823 gagaccacccatttccttcggttgacacaccacact 47326788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 433 - 480
Target Start/End: Original strand, 24165770 - 24165817
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggactt 480  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  24165770 ccacttgcggggccccgtttaaagccagagcaagctctgtatggactt 24165817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 1242115 - 1242065
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagc-aggctctgtatggacttag 482  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  1242115 ccacttgcgggaccccgtttaaagccagagcaaagctctgtatggacttag 1242065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 15566555 - 15566604
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  15566555 ccacttgcgggggcccgtttaaagccagagcaagctctgtatggacttag 15566604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 52821691 - 52821740
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||| |||| |||||||||||||||||||| |||||||||||||||||    
T  52821691 ccacttacggggccccgtttaaagccagagcaagctctgtatggacttag 52821740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 10190796 - 10190847
Alignment:
Q  432 tccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  10190796 tccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 10190847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 483
Target Start/End: Original strand, 18176942 - 18176993
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttagt 483  Q
    |||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  18176942 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttagt 18176993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 8097334 - 8097384
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  8097334 ccacttgcgggggccccgtttaaagccagagcatgctctgtatggacttag 8097384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 8456205 - 8456255
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  8456205 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 8456255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 25289769 - 25289819
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  25289769 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 25289819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 26108434 - 26108384
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  26108434 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 26108384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 34492630 - 34492680
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  34492630 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 34492680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 35493053 - 35493003
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  35493053 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 35493003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 40133504 - 40133554
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  40133504 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 40133554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 392
Target Start/End: Original strand, 43074708 - 43074802
Alignment:
Q  298 agcacctccttccaatgagcgttatccccgtacaataatctccaccgccacttcgctagcaagctcaagttcatcaaccacacatccttaacccc 392  Q
    ||||||||||||||| |||| |  || || | ||| || ||||||| |||||| |||| ||| |||||||||||||||| ||||||||| |||||    
T  43074708 agcacctccttccaaagagcctcctcaccattcaacaacctccacctccacttagctaacaaactcaagttcatcaacctcacatccttgacccc 43074802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 46576490 - 46576440
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  46576490 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 46576440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 7470271 - 7470320
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||| || |||||||||||||||||||| |||||||||| ||||||    
T  7470271 ccacttgcagggccccgtttaaagccagagcaagctctgtatgaacttag 7470320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 10083887 - 10083924
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  10083887 ccccgtttaaagccagagcaagctctgtatggacttag 10083924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Complemental strand, 25379890 - 25379853
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  25379890 ccccgtttaaagccagagcaagctctgtatggacttag 25379853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 30807221 - 30807258
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  30807221 ccccgtttaaagccagagcaagctctgtatggacttag 30807258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 43074591 - 43074640
Alignment:
Q  181 tcctcccctttcttatctaaattcaccaaatccttccaccacttagaagc 230  Q
    ||||||||| | |||||||| ||||||||||||||||||||||| |||||    
T  43074591 tcctcccctcttttatctaagttcaccaaatccttccaccacttggaagc 43074640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 481
Target Start/End: Complemental strand, 48977530 - 48977481
Alignment:
Q  433 ccacttgc-gggaccccgtttaaagccagagcaggctctgtatggactta 481  Q
    |||||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  48977530 ccacttgcaggggccccgtttaaagccagagcaagctctgtatggactta 48977481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 49258330 - 49258367
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  49258330 ccccgtttaaagccagagcaagctctgtatggacttag 49258367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 482
Target Start/End: Original strand, 45529823 - 45529859
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| |||||||||||||||||    
T  45529823 cccgtttaaagccagagcaagctctgtatggacttag 45529859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 482
Target Start/End: Complemental strand, 21363070 - 21363035
Alignment:
Q  447 ccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||| |||||||||||||||||    
T  21363070 ccgtttaaagccagagcaagctctgtatggacttag 21363035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 483
Target Start/End: Complemental strand, 30257766 - 30257715
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttagt 483  Q
    |||||||||||  |||| ||||||||||||||| ||||||||||||||||||    
T  30257766 ccacttgcgggggccccatttaaagccagagcaagctctgtatggacttagt 30257715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 4462775 - 4462725
Alignment:
Q  432 tccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||| ||||||||||||| |||| | |||||||||| ||||||    
T  4462775 tccacttgcggggccccgtttaaagctagagtaagctctgtatgaacttag 4462725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 39041907 - 39041957
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||| ||||||||||    
T  39041907 ccacttgcgggggccccgtttaaagccagagcaagctctgcatggacttag 39041957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 445 - 483
Target Start/End: Complemental strand, 40940954 - 40940916
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttagt 483  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  40940954 ccccgtttaaagtcagagcaagctctgtatggacttagt 40940916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 45272471 - 45272521
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||| ||||||||||||    
T  45272471 ccacttgcgggggccccgtttaaagccagagcaagctccgtatggacttag 45272521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 53233965 - 53234015
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  ||||||||| |||||||||| |||||||||||||||||    
T  53233965 ccacttgcgggggccccgtttagagccagagcaagctctgtatggacttag 53234015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 437 - 483
Target Start/End: Original strand, 53288772 - 53288818
Alignment:
Q  437 ttgcgggaccccgtttaaagccagagcaggctctgtatggacttagt 483  Q
    ||||||| ||||||||||||||| |||| ||| ||||||||||||||    
T  53288772 ttgcggggccccgtttaaagccaaagcaagctttgtatggacttagt 53288818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 25344125 - 25344162
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  25344125 ccccgtttaaagccagagcaaactctgtatggacttag 25344162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 29915325 - 29915374
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  ||||||||||||||| ||| |||||||||| ||||||    
T  29915325 ccacttgcgggggcccgtttaaagccagggcaagctctgtatgtacttag 29915374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 29964478 - 29964527
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  ||||||||||||||| ||| |||||||||| ||||||    
T  29964478 ccacttgcgggggcccgtttaaagccagggcaagctctgtatgtacttag 29964527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 53424233 - 53424281
Alignment:
Q  434 cacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||  |||||||||||||| ||||  ||||||||||||||||    
T  53424233 cacttgcgggggcccgtttaaagccatagcaaactctgtatggacttag 53424281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 433 - 483
Target Start/End: Complemental strand, 13266631 - 13266581
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttagt 483  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  13266631 ccacttgcggggccccgtttaaagccagagcaagctctgtatggacttagt 13266581  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 302 - 398
Target Start/End: Complemental strand, 38907308 - 38907212
Alignment:
Q  302 cctccttccaatgagcgttatccccgtacaataatctccaccgccacttcgctagcaagctcaagttcatcaaccacacatccttaaccccaagacc 398  Q
    ||||||||||| | || || |||||| | || || ||||||| |||||| || ||||| ||||||||||||||||| |||||| |||||||||||||    
T  38907308 cctccttccaaagggcattctccccgaataacaacctccacctccacttggcaagcaaactcaagttcatcaaccaaacatccctaaccccaagacc 38907212  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 3943882 - 3943832
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  3943882 ccacttgcgggagccccgtttaaagccagagcaagctctgtatggacttag 3943832  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 481
Target Start/End: Complemental strand, 4769309 - 4769259
Alignment:
Q  432 tccacttgcgggacccc-gtttaaagccagagcaggctctgtatggactta 481  Q
    |||||||||||| |||| |||||||||||||||| ||||||||||||||||    
T  4769309 tccacttgcggggcccccgtttaaagccagagcaagctctgtatggactta 4769259  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 35171942 - 35171892
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  35171942 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 35171892  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 41314134 - 41314084
Alignment:
Q  432 tccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||| |||||||    
T  41314134 tccacttgcgggatcccgtttaaagtcagagcaagctctgtatagacttag 41314084  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 482
Target Start/End: Complemental strand, 19517074 - 19517034
Alignment:
Q  442 ggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  19517074 ggaccccgtttaaagccaaagcaagctctgtatggacttag 19517034  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 27290716 - 27290680
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| |||||||||||||||||    
T  27290716 cccgtttaaagccagagcaagctctgtatggacttag 27290680  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 482
Target Start/End: Original strand, 33827642 - 33827678
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33827642 cccgtttaaagccagagcaagctctgtatggacttag 33827678  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 481
Target Start/End: Original strand, 11941279 - 11941314
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggactta 481  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11941279 cccgtttaaagccagagcaagctctgtatggactta 11941314  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 445 - 483
Target Start/End: Complemental strand, 28669002 - 28668964
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttagt 483  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  28669002 ccccgtttaaagccaaagcaagctctgtatggacttagt 28668964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 30466885 - 30466935
Alignment:
Q  433 ccacttgcgggaccccg-tttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||| ||||||||||||||| |||||||||||||||||    
T  30466885 ccacttgcgggggcccggtttaaagccagagcaagctctgtatggacttag 30466935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 36242367 - 36242417
Alignment:
Q  433 ccacttgcggg-accccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||| ||||||||||||||||||||| ||||||  |||||||||    
T  36242367 ccacttgcggggaccccgtttaaagccagagcaagctctggctggacttag 36242417  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 448 - 482
Target Start/End: Complemental strand, 45271510 - 45271476
Alignment:
Q  448 cgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||| |||||||||||||||||    
T  45271510 cgtttaaagccagagcaagctctgtatggacttag 45271476  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Complemental strand, 1191646 - 1191605
Alignment:
Q  441 gggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||| ||||||||||||||||||  ||||||||||||||||    
T  1191646 gggacaccgtttaaagccagagcaaactctgtatggacttag 1191605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 10582046 - 10582095
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||| |  |||||||||||| |||||| |||||||||||||||||    
T  10582046 ccacttgcgagggcccgtttaaagctagagcaagctctgtatggacttag 10582095  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 17324907 - 17324858
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||| |||  ||| ||||||||||||||| |||||||||||||||||    
T  17324907 ccacttgtgggggcccatttaaagccagagcaagctctgtatggacttag 17324858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 24196144 - 24196096
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||| ||| |||||||||||||||| | |||||||||||||||    
T  24196144 ccacttgcggggccc-gtttaaagccagagcaagttctgtatggacttag 24196096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 34516469 - 34516518
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||| ||  |||||||||||| |||||| |||||||||||||||||    
T  34516469 ccacttgcaggggcccgtttaaagcgagagcaagctctgtatggacttag 34516518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 44976222 - 44976259
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  44976222 ccccgtttaaagccagagcaaactctgtatggacttag 44976259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 482
Target Start/End: Original strand, 44946122 - 44946158
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| | |||||||||||||||    
T  44946122 cccgtttaaagccagagcaagttctgtatggacttag 44946158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 19456266 - 19456315
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  19456266 ccacttgcggggccccgtttaaagccagagcaagctctgtatggacttag 19456315  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 481
Target Start/End: Original strand, 6014335 - 6014384
Alignment:
Q  433 ccacttgcg-ggaccccgtttaaagccagagcaggctctgtatggactta 481  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  6014335 ccacttgcgtggaccccgtttaaagccagagcaagctctgtatggactta 6014384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 482
Target Start/End: Complemental strand, 38684348 - 38684300
Alignment:
Q  434 cacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  38684348 cacttgcgggggcccgtttaaagccagagcaagctctgtatggacttag 38684300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 7085681 - 7085731
Alignment:
Q  433 ccacttgcggg-accccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  7085681 ccacttgcggggaccccgtttaaagtcagagcaagctctgtatggacttag 7085731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 15641160 - 15641210
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  15641160 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 15641210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 15931200 - 15931150
Alignment:
Q  433 ccacttgcgggacccc-gtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  15931200 ccacttgcgagagccctgtttaaagccagagcaggctctgtatggacttag 15931150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 32059495 - 32059545
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  32059495 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 32059545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 34049953 - 34049903
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  34049953 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 34049903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 11464963 - 11465012
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||| |||||||||||||||||| | |||||||||| ||||||    
T  11464963 ccacttgcggggccccgtttaaagccagagtaagctctgtatgaacttag 11465012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 11926570 - 11926607
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  11926570 ccccgtttaaagccagagcaagctctgtatggacttag 11926607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 34310270 - 34310234
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| |||||||||||||||||    
T  34310270 cccgtttaaagccagagcaagctctgtatggacttag 34310234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 4603920 - 4603869
Alignment:
Q  432 tccacttgc-gggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||| ||| |||||||||||||||||||  |||||||||||||||||    
T  4603920 tccacttgcaggggccccgtttaaagccagagcgagctctgtatggacttag 4603869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 5049279 - 5049229
Alignment:
Q  432 tccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||| |||||||  ||||||||||||||||||| |||||||||| ||||||    
T  5049279 tccatttgcgggggcccgtttaaagccagagcaagctctgtatgaacttag 5049229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 8484716 - 8484766
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||| ||||||    
T  8484716 ccacttgcgggggccccgtttaaagccagagcaagctctgtatgaacttag 8484766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 445 - 483
Target Start/End: Original strand, 27487623 - 27487661
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttagt 483  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  27487623 ccccgtttaaagctagagcaagctctgtatggacttagt 27487661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 27498786 - 27498836
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| ||| |||||||||||||    
T  27498786 ccacttgcgggggccccgtttaaagccagagcaagctatgtatggacttag 27498836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 448 - 482
Target Start/End: Complemental strand, 30485954 - 30485920
Alignment:
Q  448 cgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||| |||||||||||||||||    
T  30485954 cgtttaaagccagagcaagctctgtatggacttag 30485920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 35425155 - 35425105
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||  |||||||||||||||||    
T  35425155 ccacttgcgggggccccgtttaaagccagagcgagctctgtatggacttag 35425105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 448 - 482
Target Start/End: Complemental strand, 37495173 - 37495139
Alignment:
Q  448 cgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||| |||||||||||||||||    
T  37495173 cgtttaaagccagagcaagctctgtatggacttag 37495139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Complemental strand, 25587057 - 25587024
Alignment:
Q  449 gtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||| |||||||||||||||||    
T  25587057 gtttaaagccagagcaagctctgtatggacttag 25587024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 38547463 - 38547378
Alignment:
Q  179 cttcctcccctttcttatctaaattcaccaaatccttccaccacttagaagcatttgttggacaaaagtcctcccctccttccaac 264  Q
    ||||||||||  ||||||| |||||||||| ||||||||||||||| |||||| |  | |||||||  ||||||||||||||||||    
T  38547463 cttcctccccactcttatccaaattcaccacatccttccaccactttgaagcactactcggacaaatctcctcccctccttccaac 38547378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 4621292 - 4621342
Alignment:
Q  433 ccacttgcggg-accccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  4621292 ccacttgcggggaccccgtttaaagccagagcaagctctgtatggacttag 4621342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 15059457 - 15059507
Alignment:
Q  433 ccacttgcggg-accccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  15059457 ccacttgcggggaccccgtttaaagccagagcaagctctgtatggacttag 15059507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 24122165 - 24122115
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  24122165 ccacttgcgggagccccgtttaaagccagagcaagctctgtatggacttag 24122115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 32930892 - 32930841
Alignment:
Q  432 tccacttgc-gggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||||||||    
T  32930892 tccacttgcagggaccccgtttaaagccagagcaagctctgcatggacttag 32930841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 1379040 - 1378990
Alignment:
Q  432 tccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||  ||||||||||||||||||| | |||||||||||||||    
T  1379040 tccacttgcgggggcccgtttaaagccagagcaagttctgtatggacttag 1378990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 24674535 - 24674485
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  24674535 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 24674485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 482
Target Start/End: Original strand, 27454935 - 27454971
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| |||||||||||||||||    
T  27454935 cccgtttaaagccagagcaagctctgtatggacttag 27454971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 480
Target Start/End: Complemental strand, 32729686 - 32729638
Alignment:
Q  433 ccacttgcggg-accccgtttaaagccagagcaggctctgtatggactt 480  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||||||    
T  32729686 ccacttgcggggaccccatttaaagccagagcaagctctgtatggactt 32729638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 482
Target Start/End: Original strand, 9500425 - 9500460
Alignment:
Q  447 ccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||| |||||||||||||||||    
T  9500425 ccgtttaaagccagagcaagctctgtatggacttag 9500460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 480
Target Start/End: Original strand, 40802124 - 40802171
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggactt 480  Q
    |||||||||||  ||||||||||| ||||||| |||||||||||||||    
T  40802124 ccacttgcggggacccgtttaaagtcagagcaagctctgtatggactt 40802171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 7766782 - 7766832
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||| ||||||| |||||||||||||||||    
T  7766782 ccacttgcgggggccccgtttaaagtcagagcaagctctgtatggacttag 7766832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 8077789 - 8077739
Alignment:
Q  433 ccacttgcgggacccc-gtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  ||| |||||||||||||||| |||||||||||||||||    
T  8077789 ccacttgcgggggccctgtttaaagccagagcaagctctgtatggacttag 8077739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 17935911 - 17935861
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  ||||||||||||||||||||  ||||||||||||||||    
T  17935911 ccacttgcgggggccccgtttaaagccagagcaaactctgtatggacttag 17935861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 7946985 - 7946936
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||| |||| |||||||| |||||| ||||||||| |||||||    
T  7946985 ccacttgcggggccccatttaaagcgagagcaagctctgtatagacttag 7946936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 45331690 - 45331727
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  45331690 ccccgtttaaagccaaagcaagctctgtatggacttag 45331727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 479
Target Start/End: Original strand, 12876990 - 12877038
Alignment:
Q  432 tccacttgcggga-ccccgtttaaagccagagcaggctctgtatggact 479  Q
    ||||||||||||  ||||||||||||| |||||| ||||||||||||||    
T  12876990 tccacttgcgggggccccgtttaaagctagagcaagctctgtatggact 12877038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 8765581 - 8765631
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  8765581 ccacttgcgggagccccgtttaaagccagagcaagctctgtatggacttag 8765631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 4718791 - 4718741
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  4718791 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 4718741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 15259461 - 15259511
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  15259461 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 15259511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 39349402 - 39349352
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  39349402 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 39349352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 3734691 - 3734728
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  3734691 ccccgtttaaagccagagcaagctctgtatggacttag 3734728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Complemental strand, 19471742 - 19471705
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  19471742 ccccgtttaaagccagagcaagctctgtatggacttag 19471705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Complemental strand, 19542666 - 19542629
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  19542666 ccccgtttaaagccagagcaagctctgtatggacttag 19542629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 19590030 - 19590067
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  19590030 ccccgtttaaagccagagcaagctctgtatggacttag 19590067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 27746391 - 27746440
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||| ||| |||| ||||||||||||||| |||||||||||||||||    
T  27746391 ccacttgtggggccccttttaaagccagagcaagctctgtatggacttag 27746440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 34237723 - 34237760
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  34237723 ccccgtttaaagccagagcaagctctgtatggacttag 34237760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Complemental strand, 42328137 - 42328100
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  42328137 ccccgtttaaagccagagcaagctctgtatggacttag 42328100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 20306040 - 20306004
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| |||||||||||||||||    
T  20306040 cccgtttaaagccagagcaagctctgtatggacttag 20306004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 21092673 - 21092637
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| |||||||||||||||||    
T  21092673 cccgtttaaagccagagcaagctctgtatggacttag 21092637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 24018514 - 24018478
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| |||||||||||||||||    
T  24018514 cccgtttaaagccagagcaagctctgtatggacttag 24018478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 481
Target Start/End: Complemental strand, 28193607 - 28193571
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggactta 481  Q
    |||||||||||||||||||| ||||||||||||||||    
T  28193607 ccccgtttaaagccagagcaagctctgtatggactta 28193571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 482
Target Start/End: Complemental strand, 2618317 - 2618282
Alignment:
Q  447 ccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||| |||||||||||||||||    
T  2618317 ccgtttaaagccagagcaagctctgtatggacttag 2618282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 21603376 - 21603326
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| ||||||||||| |||||    
T  21603376 ccacttgcgggggccccgtttaaagccagagcaagctctgtatgggcttag 21603326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Original strand, 6953079 - 6953112
Alignment:
Q  449 gtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||| |||||||||||||||||    
T  6953079 gtttaaagccagagcaagctctgtatggacttag 6953112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Complemental strand, 20470046 - 20470013
Alignment:
Q  449 gtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||| |||||||||||||||||    
T  20470046 gtttaaagccagagcaagctctgtatggacttag 20470013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 2166825 - 2166793
Alignment:
Q  450 tttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||| |||||||||||||||||    
T  2166825 tttaaagccagagcaagctctgtatggacttag 2166793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 654201 - 654251
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  654201 ccacttgcgggagccccgtttaaagccagagcaagctctgtatggacttag 654251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 3222691 - 3222740
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||    
T  3222691 ccacttgcggggccccgtttaaagacagagcaagctctgtatggacttag 3222740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 21148566 - 21148615
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||    
T  21148566 ccacttgcggggccccgtttaaagtcagagcaagctctgtatggacttag 21148615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 11449013 - 11448963
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  11449013 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 11448963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 21982375 - 21982425
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  21982375 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 21982425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 9690706 - 9690743
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  9690706 ccccgtttaaagccagagcaagctctgtatggacttag 9690743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Complemental strand, 12591766 - 12591729
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  12591766 ccccgtttaaagccagagcaagctctgtatggacttag 12591729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 15360166 - 15360203
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  15360166 ccccgtttaaagccagagcaagctctgtatggacttag 15360203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 34147474 - 34147438
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| |||||||||||||||||    
T  34147474 cccgtttaaagccagagcaagctctgtatggacttag 34147438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 34160090 - 34160054
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| |||||||||||||||||    
T  34160090 cccgtttaaagccagagcaagctctgtatggacttag 34160054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 12390567 - 12390517
Alignment:
Q  433 ccacttgcgggacccc-gtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  ||| |||||||||||||||| |||||||||||||||||    
T  12390567 ccacttgcgggggccctgtttaaagccagagcaagctctgtatggacttag 12390517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 1345063 - 1345027
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  1345063 cccgtttaaagccagagcaagctttgtatggacttag 1345027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 481
Target Start/End: Complemental strand, 9844067 - 9844031
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggactta 481  Q
    ||||||||||||||||| || ||||||||||||||||    
T  9844067 ccccgtttaaagccagaacaagctctgtatggactta 9844031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 654760 - 654809
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  654760 ccacttgcgggggcccgtttaaagccagagcaagctctgtatggacttag 654809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 31274059 - 31274010
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  31274059 ccacttgcggagccccgtttaaagccagagcaagctctgtatggacttag 31274010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 10091334 - 10091284
Alignment:
Q  433 ccacttgcggg-accccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||||||||    
T  10091334 ccacttgcggggaccccatttaaagccagagcaagctctgtatggacttag 10091284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 17197005 - 17197055
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  17197005 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 17197055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 21835297 - 21835247
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  21835297 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 21835247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 22120034 - 22119984
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  22120034 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 22119984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 40542965 - 40543015
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  40542965 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 40543015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Complemental strand, 2751404 - 2751367
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  2751404 ccccgtttaaagccagagcaagctctgtatggacttag 2751367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Complemental strand, 18044240 - 18044203
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  18044240 ccccgtttaaagccagagcaagctctgtatggacttag 18044203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Complemental strand, 23092229 - 23092192
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  23092229 ccccgtttaaagccagagcaagctctgtatggacttag 23092192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 21373857 - 21373806
Alignment:
Q  432 tccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||  |||||||||||||||||||| ||||||||| |||||||    
T  21373857 tccacttgcgggggccccgtttaaagccagagcaagctctgtatagacttag 21373806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 2103201 - 2103151
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||| ||||||||||||||| |||||||||||||||||    
T  2103201 ccacttgcgggggccccatttaaagccagagcaagctctgtatggacttag 2103151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 3851903 - 3851853
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| ||||| |||||||||||    
T  3851903 ccacttgcgggggccccgtttaaagccagagcaagctctatatggacttag 3851853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 7275423 - 7275373
Alignment:
Q  433 ccacttgcgggacccc-gtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  ||| |||||||||||||||| |||||||||||||||||    
T  7275423 ccacttgcgggggccctgtttaaagccagagcaagctctgtatggacttag 7275373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 29861816 - 29861766
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| | |||||||||||||||    
T  29861816 ccacttgcgggggccccgtttaaagccagagcaagttctgtatggacttag 29861766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Original strand, 7175934 - 7175967
Alignment:
Q  449 gtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||| |||||||||||||||||    
T  7175934 gtttaaagccagagcaagctctgtatggacttag 7175967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Complemental strand, 9683963 - 9683922
Alignment:
Q  441 gggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||||| | |||| ||||||||||||    
T  9683963 gggaccccgtttaaagccagagtaagctcggtatggacttag 9683922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 9718055 - 9718092
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  9718055 ccccgtttaaagccagagcaagctctctatggacttag 9718092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 14199722 - 14199771
Alignment:
Q  433 ccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||| |||||||||||| ||||||| ||||| ||| |||||||    
T  14199722 ccacttgcggggccccgtttaaaggcagagcaagctctatatagacttag 14199771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 23012576 - 23012613
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  23012576 ccccatttaaagccagagcaagctctgtatggacttag 23012613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 482
Target Start/End: Complemental strand, 27009492 - 27009455
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  27009492 ccccgtttaaagtcagagcaagctctgtatggacttag 27009455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 36772371 - 36772408
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  36772371 ccccgtttaaagccagagcaagctctgtatgaacttag 36772408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 482
Target Start/End: Original strand, 21217902 - 21217938
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||| |||||| |||||||||||||||||    
T  21217902 cccgtttaaagctagagcaagctctgtatggacttag 21217938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 22703618 - 22703582
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  22703618 cccgtttaaagccagagcaagctttgtatggacttag 22703582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 483
Target Start/End: Original strand, 43785353 - 43785405
Alignment:
Q  432 tccacttgcgg-gaccccgtttaaagccagagcaggctctgtatggacttagt 483  Q
    ||||||||||| | ||||||||||| |||||| | ||||||||||||||||||    
T  43785353 tccacttgcggaggccccgtttaaaaccagagtaagctctgtatggacttagt 43785405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1175 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1175
Description:

Target: scaffold1175; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 2481 - 2531
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  2481 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 2531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 10748 - 10798
Alignment:
Q  432 tccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||| ||| |||| ||||||||||||||| |||||||||||||||||    
T  10748 tccacttgtggggccccatttaaagccagagcaagctctgtatggacttag 10798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 12055 - 12105
Alignment:
Q  432 tccacttgcgggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||| ||| |||| ||||||||||||||| |||||||||||||||||    
T  12055 tccacttgtggggccccatttaaagccagagcaagctctgtatggacttag 12105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 9353 - 9404
Alignment:
Q  432 tccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||  |||| ||||||||||||||| |||||||||||||||||    
T  9353 tccacttgcgggggccccatttaaagccagagcaagctctgtatggacttag 9404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 40467 - 40417
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  40467 ccacttgcgggggccccgtttaaagccagagcaagctctgtatggacttag 40417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 41699 - 41749
Alignment:
Q  433 ccacttgc-gggaccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||| ||| |||||||||||||||||||| |||||||||||||||||    
T  41699 ccacttgcaggggccccgtttaaagccagagcaagctctgtatggacttag 41749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 5150 - 5187
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||||||||||| |||||||||||||||||    
T  5150 ccccgtttaaagccagagcaagctctgtatggacttag 5187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 1110 - 1161
Alignment:
Q  432 tccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||  |||| ||||||||||||||| |||||||||||||||||    
T  1110 tccacttgcgggggccccatttaaagccagagcaagctctgtatggacttag 1161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 7364 - 7414
Alignment:
Q  433 ccacttgcggga-ccccgtttaaagccagagcaggctctgtatggacttag 482  Q
    |||||||||||  |||||||||||||||||| | |||||||||||||||||    
T  7364 ccacttgcgggggccccgtttaaagccagagaaagctctgtatggacttag 7414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 20350 - 20314
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  20350 cccgtttaaagccagagcaagctatgtatggacttag 20314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 477
Target Start/End: Original strand, 52939 - 52971
Alignment:
Q  445 ccccgtttaaagccagagcaggctctgtatgga 477  Q
    |||||||||||||||||||| ||||||||||||    
T  52939 ccccgtttaaagccagagcaagctctgtatgga 52971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 482
Target Start/End: Original strand, 97435 - 97471
Alignment:
Q  446 cccgtttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  97435 cccgtttaaagtcagagcaagctctgtatggacttag 97471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 32412 - 32380
Alignment:
Q  450 tttaaagccagagcaggctctgtatggacttag 482  Q
    ||||||||||||||| |||||||||||||||||    
T  32412 tttaaagccagagcaagctctgtatggacttag 32380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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