View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3745_high_12 (Length: 301)

Name: NF3745_high_12
Description: NF3745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3745_high_12
NF3745_high_12
[»] chr3 (4 HSPs)
chr3 (15-283)||(40880667-40880935)
chr3 (15-219)||(40899601-40899805)
chr3 (15-219)||(40904167-40904371)
chr3 (219-283)||(27792955-27793019)
[»] chr8 (3 HSPs)
chr8 (215-248)||(26479903-26479936)
chr8 (215-245)||(25930495-25930525)
chr8 (216-248)||(4560620-4560652)
[»] chr7 (1 HSPs)
chr7 (215-288)||(47041958-47042031)
[»] chr2 (4 HSPs)
chr2 (215-280)||(7103392-7103457)
chr2 (215-247)||(750853-750885)
chr2 (214-282)||(13866962-13867030)
chr2 (215-247)||(27317026-27317058)
[»] chr6 (1 HSPs)
chr6 (214-283)||(8420114-8420184)
[»] chr5 (4 HSPs)
chr5 (215-253)||(35299878-35299916)
chr5 (215-247)||(3734608-3734640)
chr5 (214-246)||(9174936-9174968)
chr5 (215-283)||(11297115-11297183)
[»] chr1 (2 HSPs)
chr1 (214-244)||(7217992-7218022)
chr1 (215-244)||(37241740-37241769)
[»] chr4 (2 HSPs)
chr4 (214-283)||(55870260-55870329)
chr4 (217-245)||(21612761-21612789)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 40880667 - 40880935
Alignment:
Q  15 gacaggggtgttatgatcaatgacaatcagtcaagattctctattaaaggacagcccattcaccatttcgtcggtacatcgacattcagtgaatacactg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40880667 gacaggggtgttatgatcaatgacaatcagtcaagattctctattaagggacagcccattcaccattttgtcggtacatcgacattcagtgaatacactg 40880766  T
Q  115 tggttcatgctggatgtgttgcaaagatcaaccctgatgcgcctcttgacaaagtttgtattctcagctgtggaatatgcacaggtataggagattccaa 214  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40880767 tggttcatgctggatgtgttgcaaagatcaaccctgatgcacctcttgataaagtttgtattctcagctgtggaatatgcacaggtataggagattccaa 40880866  T
Q  215 tgtttggattgacttatttaagcttatctattgaaatgaacatacgtgagactgtttgagagagcttat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40880867 tgtttggattgacttatttaagcttatctattgaaatgaacatacgtgagactgtttgagagagcttat 40880935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 40899601 - 40899805
Alignment:
Q  15 gacaggggtgttatgatcaatgacaatcagtcaagattctctattaaaggacagcccattcaccatttcgtcggtacatcgacattcagtgaatacactg 114  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||    
T  40899601 gacaggggtgttatgatcaatgacaaccagtcaagattctctattaagggacagcccattcaccatttcgtcggtacatctacattcagcgagtacactg 40899700  T
Q  115 tggttcatgctggatgtgttgcaaagatcaaccctgatgcgcctcttgacaaagtttgtattctcagctgtggaatatgcacaggtataggagattccaa 214  Q
    |||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40899701 tggttcatgccggatgtgttgcaaagatcaaccctgatgcaccacttgacaaagtttgtattctcagctgtggaatatgcacaggtataggagattccaa 40899800  T
Q  215 tgttt 219  Q
    |||||    
T  40899801 tgttt 40899805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 40904167 - 40904371
Alignment:
Q  15 gacaggggtgttatgatcaatgacaatcagtcaagattctctattaaaggacagcccattcaccatttcgtcggtacatcgacattcagtgaatacactg 114  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| || |||||||    
T  40904167 gacaggggtgttatgatcaatgacaaccagtcaagattctctcttaagggacagcccattcaccatttcgtcggtacatctacattcagcgagtacactg 40904266  T
Q  115 tggttcatgctggatgtgttgcaaagatcaaccctgatgcgcctcttgacaaagtttgtattctcagctgtggaatatgcacaggtataggagattccaa 214  Q
    |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  40904267 tggttcatgccggatgtgttgcaaagatcaaccctgatgcaccacttgacaaagtttgtattcttagctgtggaatatgcacaggtataggagattccag 40904366  T
Q  215 tgttt 219  Q
    |||||    
T  40904367 tgttt 40904371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 27793019 - 27792955
Alignment:
Q  219 tggattgacttatttaagcttatctattgaaatgaacatacgtgagactgtttgagagagcttat 283  Q
    |||||||  |||||| |||||||||||||| || |||| |||||||||||||||| |||| ||||    
T  27793019 tggattggtttatttgagcttatctattgacataaacacacgtgagactgtttgatagagtttat 27792955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 26479936 - 26479903
Alignment:
Q  215 tgtttggattgacttatttaagcttatctattga 248  Q
    ||||||||||||||||||||||||||||||||||    
T  26479936 tgtttggattgacttatttaagcttatctattga 26479903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 245
Target Start/End: Original strand, 25930495 - 25930525
Alignment:
Q  215 tgtttggattgacttatttaagcttatctat 245  Q
    |||||||||||||||||||||||||||||||    
T  25930495 tgtttggattgacttatttaagcttatctat 25930525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 4560652 - 4560620
Alignment:
Q  216 gtttggattgacttatttaagcttatctattga 248  Q
    |||||||||||||||||| ||||||||||||||    
T  4560652 gtttggattgacttatttgagcttatctattga 4560620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 47041958 - 47042031
Alignment:
Q  215 tgtttggattgacttatttaagcttatctattgaaatgaacatacgtgagactgtttgagagagcttattgatg 288  Q
    ||||||||||||||||||| ||| |||||||||| || ||||   |||||||| |||| |||||||||| ||||    
T  47041958 tgtttggattgacttatttgagcatatctattgacattaacacttgtgagactttttgtgagagcttatggatg 47042031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 7103392 - 7103457
Alignment:
Q  215 tgtttggattgacttatttaagcttatctattgaaatgaacatacgtgagactgtttgagagagct 280  Q
    ||||||||||||||||||| || ||||||||||| |||| || | |||||| |||||| |||||||    
T  7103392 tgtttggattgacttatttgagtttatctattgacatgagcacatgtgagattgtttgggagagct 7103457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 750885 - 750853
Alignment:
Q  215 tgtttggattgacttatttaagcttatctattg 247  Q
    ||||||||||||||||||| |||||||||||||    
T  750885 tgtttggattgacttatttgagcttatctattg 750853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 13867030 - 13866962
Alignment:
Q  214 atgtttggattgacttatttaagcttatctattgaaatgaacatacgtgagactgtttgagagagctta 282  Q
    |||||||||||||| ||||| |||||||||| ||  || ||||   |||||||||||||||||| ||||    
T  13867030 atgtttggattgacctatttgagcttatctactgccataaacacttgtgagactgtttgagagaactta 13866962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 27317026 - 27317058
Alignment:
Q  215 tgtttggattgacttatttaagcttatctattg 247  Q
    ||||||||||||||||||| |||||||||||||    
T  27317026 tgtttggattgacttattttagcttatctattg 27317058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 8420114 - 8420184
Alignment:
Q  214 atgtttggattgactt-atttaagcttatctattgaaatgaacatacgtgagactgtttgagagagcttat 283  Q
    |||||||||||||||| |||| |||||||||||||| || ||||   ||||||||||| | ||||||||||    
T  8420114 atgtttggattgactttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttat 8420184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 35299916 - 35299878
Alignment:
Q  215 tgtttggattgacttatttaagcttatctattgaaatga 253  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  35299916 tgtttggattgacttatttgagcttatctattgacatga 35299878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 3734608 - 3734640
Alignment:
Q  215 tgtttggattgacttatttaagcttatctattg 247  Q
    |||||||||||||||||||||| ||||||||||    
T  3734608 tgtttggattgacttatttaagattatctattg 3734640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 9174968 - 9174936
Alignment:
Q  214 atgtttggattgacttatttaagcttatctatt 246  Q
    |||||||||||||||||||| ||||||||||||    
T  9174968 atgtttggattgacttatttgagcttatctatt 9174936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 11297115 - 11297183
Alignment:
Q  215 tgtttggattgacttatttaagcttatctattgaaatgaacatacgtgagactgtttgagagagcttat 283  Q
    |||||| ||||||||||||||||||||||| ||  || ||||   || ||||||||||| |||||||||    
T  11297115 tgtttgaattgacttatttaagcttatctagtggcataaacacttgtaagactgtttgaaagagcttat 11297183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 244
Target Start/End: Original strand, 7217992 - 7218022
Alignment:
Q  214 atgtttggattgacttatttaagcttatcta 244  Q
    |||||||||||||||||||||||||||||||    
T  7217992 atgtttggattgacttatttaagcttatcta 7218022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 244
Target Start/End: Original strand, 37241740 - 37241769
Alignment:
Q  215 tgtttggattgacttatttaagcttatcta 244  Q
    ||||||||||||||||||||||||||||||    
T  37241740 tgtttggattgacttatttaagcttatcta 37241769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 55870260 - 55870329
Alignment:
Q  214 atgtttggattgacttatttaagcttatctattgaaatgaacatacgtgagactgtttgagagagcttat 283  Q
    ||||||||||| |||||||| || ||||||| ||| || |||||  |||||||| ||||||| |||||||    
T  55870260 atgtttggattaacttatttgagtttatctaatgacataaacatttgtgagactctttgagatagcttat 55870329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 21612761 - 21612789
Alignment:
Q  217 tttggattgacttatttaagcttatctat 245  Q
    |||||||||||||||||||||||||||||    
T  21612761 tttggattgacttatttaagcttatctat 21612789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University