View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3745_high_2 (Length: 576)
Name: NF3745_high_2
Description: NF3745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3745_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 32907032 - 32907586
Alignment:
| Q |
1 |
acagaaaaagataaatagcttctgtaaggatcggtaaatttaacaaatttctaaaatatcaatttagcccatttggtcannnnnnnncaaatttttagag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
32907032 |
acagaaaaagataaatagcttctgtaaggatcggtaaatttaacaaatttctaaaatatcaatttagcccatttggtcatttttttttcaaattttagag |
32907131 |
T |
|
| Q |
101 |
attttaggtttactctgatgcaataaaaaactatagaagtcaatatgatattcttgcataggataaacctaacatctttaaaagtatagtgctagatttg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32907132 |
attttatgtttactctgatgcaataaaaaactatagaagtcaatatgatattcttgcataggataaacctaacatctttaaaagtatagtgctagatttg |
32907231 |
T |
|
| Q |
201 |
aaagggnnnnnnn-ttattgttgtttattcaatttaatggacttaattattgctatttttgaaattttaggcattaaattaacacccttacaaattgaag |
299 |
Q |
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| T |
32907232 |
aaagggaaaaaaaattattgttgtttattcaatttaatggacttaattattgctatttttgaaattttaggcattaaattaacacccttacaaattgaag |
32907331 |
T |
|
| Q |
300 |
tgtgtttgtatatgtatatttgagttgaatttgtggtgattggattttgaaagagacaggtggtggagttaaagagacaaagaagtgggcaaccacttca |
399 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32907332 |
tgtgtgtgtatatgtatatttgaattgaatttgtggtgattggattttgaaagagacaggtggtggagttaaagagacaaagaagtgggcaaccacttca |
32907431 |
T |
|
| Q |
400 |
aactgcagtgaacaagcagaggtctgtaatttctcttgtctttgttgatggtacaattacaacatttattcacctttgttaaccaaagatacccaaaaga |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32907432 |
aactgcagtgaacaagcagaggtctgtaatttctcttgtctttgttgatggtacaattacaacatttattcatctttgttaaccaaagatacccaaaaga |
32907531 |
T |
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| Q |
500 |
tttcataatcaaagaggttttgtatgttggnnnnnnngagtgtcctctaaagctg |
554 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32907532 |
tttcataatcaaagaggttttgtatgttggaaaaaaagagtgtcctctaaagctg |
32907586 |
T |
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