View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3745_high_6 (Length: 441)
Name: NF3745_high_6
Description: NF3745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3745_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 148 - 427
Target Start/End: Complemental strand, 31853881 - 31853608
Alignment:
| Q |
148 |
gtattgagaggatcatataattcccacaatgggtacgaaacatttttccaaatataaatataggtttatgacaagtacaatttttctgtccgatgtattt |
247 |
Q |
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| T |
31853881 |
gtattgagaggatcatataattcccacaatgggtacgaaacatttttccaaatataaatataggtttatgacaagtacaatttctctgtccgatgtattt |
31853782 |
T |
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| Q |
248 |
catggtcacagctacagctagactaacaagtgtgtattaaagaactttctcgtacagtgtcttgctggcttttgtgcatatcaactatttttccacatgg |
347 |
Q |
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| T |
31853781 |
catggtcacagcta------gactaacaagtgtgtattaaagaactttctcgtacagtgtcttgctggcttttgtgcatatcaactatttttccacatgg |
31853688 |
T |
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| Q |
348 |
taacaattcccactatgttaattcatcataagacacgtacattaacacatgtccccctgcatgtttttgccatatacccc |
427 |
Q |
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| T |
31853687 |
taacaattcccgctatgttaattcatcataagacacgtacattaacacatgtccccctgcatgtttttgccatatacccc |
31853608 |
T |
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