View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3745_high_7 (Length: 401)
Name: NF3745_high_7
Description: NF3745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3745_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 2892195 - 2891813
Alignment:
| Q |
17 |
ctttctagttaaatactaaccaatgagaaaaataatcacaacaaatattaaggatgtttttatggttgttaccttaaatattat--tttccaacgaatat |
114 |
Q |
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| T |
2892195 |
ctttctagttaaatactaaccaatgagaaaaataatcacaacaaatattaaggatgtttttatggttgttaccttaaatattatgttttccaacgaacat |
2892096 |
T |
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| Q |
115 |
tatatgtgtgtttttgtttgagaaacaatatctttctaattatgtttcttgatt--------cttgccataaatgtttaaagctgtgattaacaaagtat |
206 |
Q |
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| T |
2892095 |
tatacgtgtgtttttgtttgagaaacaatatctttctaattatgtttcttgatttcttgattcttgccataaatgtttaaagctgtgattaacaaagtat |
2891996 |
T |
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| Q |
207 |
tccagatattttccacatcactctacacgaaatttactctcacaggtcacgtaaattatctctcttgacagctcactaaaatttactctta-tgaaattt |
305 |
Q |
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| T |
2891995 |
tccagatattttccacatcactctacacgaaatttactctcacaggtcacgtaaattatctctcttgacagctcattaaaatttactcttattgaaattt |
2891896 |
T |
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| Q |
306 |
actctgtatttataccacaatcaaatattttttgctaaataagattaaaatcaagatgcatttatatgtgtccaacattgttcat |
390 |
Q |
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| T |
2891895 |
actctgcatttataccacaatcaaatattttttgctaaataagattaaaatcaagatgcatt--tatgtgtccaacattgttcat |
2891813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 2886642 - 2886553
Alignment:
| Q |
298 |
tgaaatttactctgtatttataccacaatcaaatattttttgctaaataagattaaaatcaagatgcatttatatgtgtccaacattgttcat |
390 |
Q |
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| T |
2886642 |
tgaaatttactctgtatttataccacaatcaaatat-ttttgctaaataagattaaaatcaagatgcatt--tatgtgtctaacattgttcat |
2886553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 48871830 - 48871876
Alignment:
| Q |
56 |
aacaaatattaaggatgtttttatggttgttaccttaaatattattt |
102 |
Q |
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| T |
48871830 |
aacaaatattgagtatgtttttatggttattaccttaaaaattattt |
48871876 |
T |
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