View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3745_low_1 (Length: 603)
Name: NF3745_low_1
Description: NF3745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3745_low_1 |
 | |
|
| [»] scaffold0331 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 19 - 585
Target Start/End: Complemental strand, 9391221 - 9390656
Alignment:
| Q |
19 |
actactcctcgttctgattttcaaaaatatatcagattacagagaagtggtaagttttgtattgatttttgagttttgaagtagtcttggttgtttgcat |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9391221 |
actactcctcgtactgattttcaaaaatatatcagattacagagaagtggtaagttttgtattgatttttgagttttgaagtagtcttggttgtttgcat |
9391122 |
T |
|
| Q |
119 |
ttttagtactctgttgtcattgcaatgaaagatgtcagcagttttttatgaatgaatgttttatatttcaatgtgttcatactaaatatcaagcttacct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9391121 |
ttttagtactctgttgtcattgcaatgaaagatgtcagcagttttttatgaatgaatgttttatatttcaatgtgttcatactaaatatcaagcttacct |
9391022 |
T |
|
| Q |
219 |
agagtaagattcatacaatctctatttatcagctaaaatgtactggctgcatatatatgaactgcattttgtctcactctggtcttttttataactagaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9391021 |
agagtaagattcatacaatctctatttatcagctaaaatgtactggctgcatatatatgaactgcattttgtcacactctggtcttttttataactagaa |
9390922 |
T |
|
| Q |
319 |
ttgtgtatgtggtcattgcatgatgttacatgtcacattcacatggttagaaaatctgtcttgcttccttcatcattaaactgaactggtgttgaatctt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9390921 |
ttgtgtatgtggtcattgcatgatgttacatgtcacatt-acatggttagaaaatctgtcttgcttccttcatcattaagctgaactggtgttgaatctt |
9390823 |
T |
|
| Q |
419 |
gtgttttctactccagagatggtgaattattctgctgactctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9390822 |
gtgttttctactccagagatggtgaattattctgctgactctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatg |
9390723 |
T |
|
| Q |
519 |
actatgagagagtttgccacattccaaagaagaaggtatcatatcttgaattgatattatgtactgt |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9390722 |
actatgagagagtttgccacattccaaagaagaaggtatcatatcttgaattgatattatgtactgt |
9390656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 19 - 581
Target Start/End: Complemental strand, 31940884 - 31940327
Alignment:
| Q |
19 |
actactcctcgttctgattttcaaaaatatatcagattacagagaagtggtaagttttgtattgatttttgagttttgaagtagtcttggttgtttgcat |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31940884 |
actactcctcgtactgattttcaaaaatatatcagattaaagagaagtggtaagttttgtattgatttttgagttttgaagtagtcttggttgtttgctt |
31940785 |
T |
|
| Q |
119 |
ttttagtactctgttgtcattgcaatgaaagatgtcagcagtttttt-atgaatgaatgttttatatttcaatgtgttcatactaaatatcaagcttacc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31940784 |
ttttagtactctgttgtcattgcaatgaaagatgtcagcagtttttttatgaatgaatgttttatatttcaatgtgttcatactaaatatcaagcttacc |
31940685 |
T |
|
| Q |
218 |
tagagtaagattcatacaatctctatttatcagctaaaatgtactggctgcatatatatgaactgcattttgtctcactctggtcttttttataactaga |
317 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31940684 |
tagagtaagattcacacaatctctacttatcagctaaaatgtactggctgcatatatatgaactgcattttgtctcactctggtcttttttataactaga |
31940585 |
T |
|
| Q |
318 |
attgtgtatgtggtcattgcatgatgttacatgtcacattcacatggttagaaaatctgtcttgcttccttcatcattaaactgaactggtgttgaatct |
417 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31940584 |
attgtgtatgtggtcattgcatgttgttacatg------tcatatggttagaaaatctgtcttgcttccttcatcagtaaactgaactggtgttgaatct |
31940491 |
T |
|
| Q |
418 |
tgtgttttctactccagagatggtgaattattctgctgactctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgat |
517 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31940490 |
tgtgttttctactccagagatggcgaattattctgctgactatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgat |
31940391 |
T |
|
| Q |
518 |
gactatgagagagtttgccacattccaaagaagaaggtatcatatcttgaattgatattatgta |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
31940390 |
gactatgagagagtttgccacattccaaagaagaaggtaccgtatcttgaattgatattatgta |
31940327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 433 - 555
Target Start/End: Complemental strand, 13537012 - 13536890
Alignment:
| Q |
433 |
agagatggtgaattattctgctgactctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgactatgagagagtt |
532 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||| |||||||||| ||||| ||||||||| || ||| ||||||| | ||||| ||||||||||| |
|
|
| T |
13537012 |
agagatggtgaattattcagctgactatgaaaacacaccaagtggaatgctatatgatcacttcccattggaattaaacaaagatgattatgagagagtc |
13536913 |
T |
|
| Q |
533 |
tgccacattccaaagaagaaggt |
555 |
Q |
| |
|
|||||||||||| | |||||||| |
|
|
| T |
13536912 |
tgccacattccacacaagaaggt |
13536890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 290
Target Start/End: Complemental strand, 13537429 - 13537159
Alignment:
| Q |
23 |
ctcctcgttctgattttcaaaaatatatcagattacagagaagtggtaagttttgtattgatttttgagttttgaagta-gtcttggttgtttgcatttt |
121 |
Q |
| |
|
||||||| || || ||||| ||||||||| | || |||||||||||| | |||||||| |||||| |||||||||||| || |||||| |||| | | |
|
|
| T |
13537429 |
ctcctcggtcagaatttcagaaatatatccgcctaaagagaagtggtatgatttgtatttattttttagttttgaagtatatcacggttgtctgcaatat |
13537330 |
T |
|
| Q |
122 |
tagtactctgttgtcattgcaatgaaagatgtcag-cagttttttatgaatgaatgttttatatttcaatgtgttcatactaaatatcaagcttacctag |
220 |
Q |
| |
|
||||| ||||||||||| ||| |||| || | || || | | |||||||||||||||| ||| |||||| | || | || |||||||||||| | | | |
|
|
| T |
13537329 |
gagtaccctgttgtcattacaacgaaatattttagccaatgtattatgaatgaatgtttcatagttcaatatattaagacaaaatatcaagctcagttgg |
13537230 |
T |
|
| Q |
221 |
ag-taagattcatacaatctctatttatcagctaaaatgtactggctgcatatatatgaactgcattttgt |
290 |
Q |
| |
|
|| | |||| | |||||||| ||||| | |||||| || ||||||||||||| || |||||||||||| |
|
|
| T |
13537229 |
agtttggattattgcaatctctgtttattaagtaaaatctaatggctgcatatatttggactgcattttgt |
13537159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 585
Target Start/End: Complemental strand, 1339048 - 1338507
Alignment:
| Q |
19 |
actactcctcgttctgattttcaaaaatatatcagattacagagaagtggtaagttttgtattgatttttgagttttgaagtagtcttggttgtttgcat |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| || |||||||||||| | | |
|
|
| T |
1339048 |
actactcctcgtactgattttcaaaaatatatcagattaaagagaagtggtatgttttgtattgattt--gagttttgaattattcttggttgttttctt |
1338951 |
T |
|
| Q |
119 |
ttttagtactctgttgtcattgcaatgaaagatgtcagcagtttttt-atgaatgaatgttttatatttcaatgtgttcatactaaatatcaagcttacc |
217 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| | | ||||||||||||| || |
|
|
| T |
1338950 |
ttttggtactctgt---cattgcaatgaaagatgtcagcggtttttttatgaatgaatgtttcatatttcaatgtgtttaaattaaatatcaagctcact |
1338854 |
T |
|
| Q |
218 |
tagagtaagattcatacaatctctatttatcagctaaaatgtactggctgcatatatatgaactgcattttgtctcactctggtcttttttataactaga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
1338853 |
tagagtaagattcatacaatctctatttatcagctaaaatgtactggccgcat---------------tttgtcttactctggtcttttttataactagg |
1338769 |
T |
|
| Q |
318 |
attgtgtatgtggtcattgcatgatgttacatgtcacattcacatggttagaaaatctgtcttgcttccttcatcattaaactgaactggtgttgaatct |
417 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
1338768 |
attgtgtatgtggtcattgcatgttgttacatgtcacgt------ggttagaaaatttgtcttgcttccttcatcattaacctgaactggttttgaatct |
1338675 |
T |
|
| Q |
418 |
tgtgttttctactccagagatggtgaattattctgctgactctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgat |
517 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
1338674 |
tatgttttctactccagagatggtgaattatttggctgactctcaaagtgcaccaagtggtatgctgtatgatcataggcctttgaaattaaataccgat |
1338575 |
T |
|
| Q |
518 |
gactatgagagagtttgccacattccaaagaagaaggtatcatatcttgaattgatattatgtactgt |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
1338574 |
gactatgagagagtttgccacattccaaaggagaaggttccctatctttaattgatattatgtactgt |
1338507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 2617 - 2723
Alignment:
| Q |
19 |
actactcctcgttctgattttcaaaaatatatcagattacagagaagtggtaagttttgtattgatttttgagttttgaagtagtcttggttgtttgcat |
118 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2617 |
actactcctcgtacttattttcaaaaatatatcagattaaagagaagcggtaagttttgtattgatttttgagttttgaagtagtcttggttgtttgcat |
2716 |
T |
|
| Q |
119 |
ttttagt |
125 |
Q |
| |
|
||||||| |
|
|
| T |
2717 |
ttttagt |
2723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 356 - 585
Target Start/End: Complemental strand, 5640621 - 5640394
Alignment:
| Q |
356 |
ttcacatggttagaaaatctgtcttgcttccttcatcattaaactgaactggtgttgaatcttgtgttttcta--ctccagagatggtgaattattctgc |
453 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| | || | | |||||||| |||||||||| ||| ||||||||||||||| | || |
|
|
| T |
5640621 |
ttcacatgtttagaaaaattgtcttgcttccttcattattaa-cacaaat--tattgaatct-gtgttttctattctctagagatggtgaattacacagc |
5640526 |
T |
|
| Q |
454 |
tgactctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaag |
553 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||| || | ||||||| ||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
5640525 |
tgactctgaaagtgcaccaagtggtctgctgtatgatcacaggccatatctgttaaataacgatgactatgagagagtttgcctcattccgaagaagaag |
5640426 |
T |
|
| Q |
554 |
gtatcatatcttgaattgatattatgtactgt |
585 |
Q |
| |
|
|| | |||||||||||||||||||| |||| |
|
|
| T |
5640425 |
gttcctgatcttgaattgatattatgttctgt |
5640394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 54 - 199
Target Start/End: Complemental strand, 5640855 - 5640705
Alignment:
| Q |
54 |
attacagagaagtggtaagttttgtattgatttttgagttttgaag-----tagtcttggttgtttgcatttttagtactctgttgtcattgcaatgaaa |
148 |
Q |
| |
|
|||| |||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||| |||| |||||| |
|
|
| T |
5640855 |
attaaagagaagtggtatgttttctattgatttttgagttttgaagtagattagtcttggttgtttgcctttttagtaatttgttgtctttgc-atgaaa |
5640757 |
T |
|
| Q |
149 |
gatgtcagcag-ttttttatgaatgaatgttttatatttcaatgtgttcata |
199 |
Q |
| |
|
|||||| | | ||||||||||| ||||| || ||||||||| ||||||||| |
|
|
| T |
5640756 |
gatgtctgttgtttttttatgaacgaatggttcatatttcaaagtgttcata |
5640705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 5640921 - 5640856
Alignment:
| Q |
22 |
actcctcgttctgattttcaaaaatatatcagattacagagaagtggtaagttttgtattgatttt |
87 |
Q |
| |
|
||||||||| |||||||||| | |||||| |||||| |||||||||||| ||||| |||||||||| |
|
|
| T |
5640921 |
actcctcgtactgattttcagagatatattagattaaagagaagtggtatgttttctattgatttt |
5640856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University