View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3745_low_11 (Length: 350)
Name: NF3745_low_11
Description: NF3745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3745_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 2117372 - 2117697
Alignment:
| Q |
11 |
caaagggagtgcatggaatccgaaccacttttgtattgaaggtccaagcgtgagttaaacgaaattaaccttcaacaataaaccctaatttctgtcattt |
110 |
Q |
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| T |
2117372 |
caaagagagtgcatggaattcgaaccacttttgtattgaatgtccaggcatgagttacacgaaattaaccttcaacaataaaccctaatttatgtcattt |
2117471 |
T |
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| Q |
111 |
tcccgtatctcttctcgtggaca--agagattaaatgatttcttcccaaggtgtttaaaagtgtttctaaaccctagaattttcccccaaactctcaatt |
208 |
Q |
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| T |
2117472 |
tcctgtatctcttctcgtggacacaagagattaaatgatttcttcccaaggtgtttaaaagtgtttctaaaccctagaattttcccccaaactctcaatt |
2117571 |
T |
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| Q |
209 |
ttaaccctaaaagttcccacttatgttgccatag-actcacacttttccacgttaaaacaattgatgcataaactgcctatttataggcctggttgcacg |
307 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2117572 |
ttaaccctaaaagttcccacttatgttgccatagaactcacacttttccacatt-aaacaattgatgcataaactgcctatttataggcctggttgcacg |
2117670 |
T |
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| Q |
308 |
caaatgagaggtgtgccttgctcatag |
334 |
Q |
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| T |
2117671 |
caaatgagaggtgtgccttgctcatag |
2117697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 42803852 - 42803796
Alignment:
| Q |
165 |
aaaagtgtttctaaaccctagaattttcccccaaactctcaa-ttttaaccctaaaa |
220 |
Q |
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| T |
42803852 |
aaaagtgtttcccaaccctagaattttcccaaaaactctcaatttttaaccctaaaa |
42803796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 31026097 - 31026211
Alignment:
| Q |
62 |
gagttaaacgaaattaaccttcaacaa-taaaccctaatttctgtcattttcccgtatctcttctcgtggacaagagattaaatgatttcttcccaaggt |
160 |
Q |
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| T |
31026097 |
gagttacaagaaattagctttcaacaagtaaaccctgatttctaccattttcccaaatctcttattgtggtcaagatactcaatgatttattcccaaggt |
31026196 |
T |
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| Q |
161 |
gtttaaaagtgtttc |
175 |
Q |
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| T |
31026197 |
gtataaaagtgtttc |
31026211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 38860465 - 38860497
Alignment:
| Q |
71 |
gaaattaaccttcaacaataaaccctaatttct |
103 |
Q |
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| T |
38860465 |
gaaattagccttcaacaataaaccctaatttct |
38860497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 27935783 - 27935668
Alignment:
| Q |
84 |
aacaataaaccctaatttctgtcattttcccgtatctcttctcgtggacaagagattaaatgatttcttcccaaggtgtttaaaagtgtttctaaaccct |
183 |
Q |
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||||||||||| |||||||| ||||||| |||||||||||||||||| | | | |||||||| ||||||| |||||| ||||||||| |||| | |
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| T |
27935783 |
aacaataaaccataatttctacatttttccccaatctcttctcgtggacaaaatactcaatgatttattcccaaagtgttttgaagtgtttcccaacctt |
27935684 |
T |
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| Q |
184 |
agaattttcccccaaa |
199 |
Q |
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|||| |||||||||| |
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| T |
27935683 |
agaaacttcccccaaa |
27935668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 32889646 - 32889539
Alignment:
| Q |
81 |
ttcaacaataaaccctaatttctgtcattttcccgtatctcttctcgtggacaagagattaaatgatttcttcccaaggtgtttaaaagtgtttctaaac |
180 |
Q |
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|||||||||||| ||||||||| | | ||| || |||||||| ||||| ||||||| | |||||| |||||||||||| |||||||||||| || |
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| T |
32889646 |
ttcaacaataaaatctaatttctaccctgttcgcgaatctcttcacgtggccaagagactt--tgatttattcccaaggtgtacaaaagtgtttcttaat |
32889549 |
T |
|
| Q |
181 |
cctagaattt |
190 |
Q |
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|||||||||| |
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| T |
32889548 |
cctagaattt |
32889539 |
T |
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