View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3745_low_12 (Length: 347)
Name: NF3745_low_12
Description: NF3745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3745_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 331
Target Start/End: Original strand, 6301005 - 6301332
Alignment:
| Q |
12 |
atgaaaacaattagtataaaagaacaatctcatgtattgttgtctaatggcaattttcaatcatgaagtcatttcattaaacaagtgaatatgattaaaa |
111 |
Q |
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| T |
6301005 |
atgaaaacaattagtataaaagaataatctcatgtattgttgtctaatggcaattttcaatcatgaagtcatttcattaaacaagtgaatatgattaaaa |
6301104 |
T |
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| Q |
112 |
gaagtgtcatatcctattagaagtagtgaagaaccnnnnnnnnnnnnnncctatagaaaatatcttggtgtagataatatatatcacaagattagcataa |
211 |
Q |
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| T |
6301105 |
gaagtgtcatatcctattagaagtagtgaagaac---tattttttttttcctatagaaaatatcttggtgtagataatatatatcacaagattagcataa |
6301201 |
T |
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| Q |
212 |
ta-----------nnnnnnnnaatattccaaatgactaaaaaactacggttaggataacactacacgtgcataatgaaaggaaagtcttaccaatttata |
300 |
Q |
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| T |
6301202 |
tattttttcttccatgattttaatattccaaatgactaaaaaactatggttaggataacaccacacgtgcataatgaaaggaaagtcttgccaatttata |
6301301 |
T |
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| Q |
301 |
atggttttataatttatttatgccatattat |
331 |
Q |
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| T |
6301302 |
atggttttataatttatttatgccatattat |
6301332 |
T |
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