View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3745_low_13 (Length: 331)
Name: NF3745_low_13
Description: NF3745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3745_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 9137140 - 9137470
Alignment:
| Q |
1 |
atatgtttaaaatctttgacttgttcgcgacatatctttagattgagtgcatctgatcttccgtgcaatttgggaatctaatctttctaacatcagatgc |
100 |
Q |
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| T |
9137140 |
atatgtttaaaatccttgacttgttcgcgacatatgtttagattgagtgcatctgatcttccgtgcaatttgggaatctaatctttcttacatcagatgc |
9137239 |
T |
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| Q |
101 |
ggagttagatatggtgggctgatggcggcgttcatccaatgacctgcgagaccattgcctacatcgttttggctttctggtcaagacaaaacttggagaa |
200 |
Q |
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| T |
9137240 |
ggagttagatatggtgggctgatggcggtgttcatccaatgacctgcgagaccattgcccacatcgttatggctttctggtcaagacaaaacttggagaa |
9137339 |
T |
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| Q |
201 |
aattttacaagaatatcctttggttgttgatcgagaagaaatttctttaacaagccaaataagagaatctatattcctatttctttcgagtttcaaccaa |
300 |
Q |
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| T |
9137340 |
aattttacaagaatatcctttggttgttgatcgagaagaaacttctttaacaagccaaatgagagaatctatattcctatttctttcgagtttcaacaaa |
9137439 |
T |
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| Q |
301 |
aatatactcacacacatactatatagtttac |
331 |
Q |
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| T |
9137440 |
aatatactcacacacatactatatagtttac |
9137470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 31402613 - 31402756
Alignment:
| Q |
67 |
aatttgggaatctaatctttctaacatcagatgcggagttagatatggtgggctgatggcggcgttcatccaatgacctgcgagaccattgcctacatcg |
166 |
Q |
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| T |
31402613 |
aatttgggaatatgatctttcttacaccatatgtggagttagat-tgttgggctgatggtggagtacatccaatgacatgtgaggccactagctccatcg |
31402711 |
T |
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| Q |
167 |
ttttggctttctggtcaagacaaaacttggagaaaattttacaag |
211 |
Q |
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| T |
31402712 |
tcgcggctttttggtcaagacaaaatctggagaaaattttacaag |
31402756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 31459124 - 31459205
Alignment:
| Q |
120 |
tgatggcggcgttcatccaatgacctgcgagaccattgcctacatcgttttggctttctggtcaagacaaaacttggagaaa |
201 |
Q |
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| T |
31459124 |
tgatggtggggttcatccaattacttgcgataccattgattacatcactatggctttttggtcaagacaaaacctagagaaa |
31459205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 31386655 - 31386699
Alignment:
| Q |
121 |
gatggcggcgttcatccaatgacctgcgagaccattgcctacatc |
165 |
Q |
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| T |
31386655 |
gatggtggggttcatccaatgacttgcgagaccattgactacatc |
31386699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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