View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3745_low_18 (Length: 245)
Name: NF3745_low_18
Description: NF3745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3745_low_18 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 42393313 - 42393549
Alignment:
| Q |
9 |
agaagcaaaggggaaataattaaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaa |
108 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42393313 |
agaaccaaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaa |
42393412 |
T |
|
| Q |
109 |
gggtctctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcatta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42393413 |
gggtctctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgagacatta |
42393512 |
T |
|
| Q |
209 |
gaagtggaagtgctgggtgcaaacgaagggtttcttt |
245 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42393513 |
gaagtggaagtgatgggtgcaaacgaagggtttcttt |
42393549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 42376766 - 42376997
Alignment:
| Q |
14 |
caaaggggaaataattaaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaagggtc |
113 |
Q |
| |
|
|||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| ||||||| |
|
|
| T |
42376766 |
caaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaaccttgtaggatcaaattctagtgggttctcccaaacataagggtc |
42376865 |
T |
|
| Q |
114 |
tctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagt |
213 |
Q |
| |
|
||||||||||||||||||||| | ||| |||| ||| |||| |||||||||||||||||| | ||||||||||||||||||||| ||||| | || |||| |
|
|
| T |
42376866 |
tctatgaatagcccaaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttcacttgggcagtgagggactaaaagt |
42376965 |
T |
|
| Q |
214 |
ggaagtgctgggtgcaaacgaagggtttcttt |
245 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||| |
|
|
| T |
42376966 |
ggaagtgcagggtgtaaacgaagagtttcttt |
42376997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 127 - 245
Target Start/End: Original strand, 42387228 - 42387346
Alignment:
| Q |
127 |
caaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagtggaagtgctgggt |
226 |
Q |
| |
|
|||||||| | ||| |||| ||| |||| |||||||||||||||||| | ||||||||||||||||||||| ||||| | || ||||||||||| ||||| |
|
|
| T |
42387228 |
caaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttcacttgggcagtgagggactaaaagtggaagtgttgggt |
42387327 |
T |
|
| Q |
227 |
gcaaacgaagggtttcttt |
245 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
42387328 |
gcaaacgaagggtttcttt |
42387346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 42387162 - 42387220
Alignment:
| Q |
14 |
caaaggggaaataattaaagtcattccctttataatcccatttaccatccaagaacctt |
72 |
Q |
| |
|
|||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42387162 |
caaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaacctt |
42387220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University