View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3745_low_21 (Length: 202)
Name: NF3745_low_21
Description: NF3745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3745_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 144; Significance: 6e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 13659386 - 13659219
Alignment:
| Q |
19 |
aacaagattataataacaactgttaagggccaacttggatagataaaaatggaattcacaaagaatcgcattccattacgactaaagaagagcggtgcta |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13659386 |
aacaagattataataacaagtgttaagggccaagttggatagataaatatggaattcacaaagaatcgcattccgttacgactaaagaagagcggtgcta |
13659287 |
T |
|
| Q |
119 |
gaaacccgccgccaaaatcatcagtcaatgtagtgacgatatcagcaaatttaccgtgaggtaaaatc |
186 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13659286 |
gaaacccgccgcaaaaatcatcagtcagtgtagtgacgatatcagcaaatttaccgtgaggtaaaatc |
13659219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 13651900 - 13651733
Alignment:
| Q |
19 |
aacaagattataataacaactgttaagggccaacttggatagataaaaatggaattcacaaagaatcgcattccattacgactaaagaagagcggtgcta |
118 |
Q |
| |
|
||||||||||||| |||| |||||||||||| || ||| || || |||| ||||||| ||| ||||||||||| ||||||||||||||||| || | |
|
|
| T |
13651900 |
aacaagattataagcacaagtgttaagggccagtttcgatggacgaatatggctttcacaatgaagcgcattccattgcgactaaagaagagcggggcca |
13651801 |
T |
|
| Q |
119 |
gaaacccgccgccaaaatcatcagtcaatgtagtgacgatatcagcaaatttaccgtgaggtaaaatc |
186 |
Q |
| |
|
||||| |||| ||||| |||||||||| || ||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
13651800 |
gaaactcgccaccaaagtcatcagtcattgacgtgaccatatcagcaaatttaccatgaggcaaaatc |
13651733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 28607918 - 28607844
Alignment:
| Q |
112 |
ggtgctagaaacccgccgccaaaatcatcagtcaatgtagtgacgatatcagcaaatttaccgtgaggtaaaatc |
186 |
Q |
| |
|
|||||||||||||| || |||||||||| ||||| || ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
28607918 |
ggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccgtgaggtaaaatc |
28607844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University