View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3745_low_4 (Length: 528)
Name: NF3745_low_4
Description: NF3745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3745_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 512
Target Start/End: Original strand, 2969986 - 2970497
Alignment:
| Q |
18 |
agacacaccttcagtttacaggtaaattaaaattttcatatggtattaagattgtttgttacccatccaacaaggcttcttcctccaagtcttttgtctg |
117 |
Q |
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| T |
2969986 |
agacacaccttcagtttacaggtaaattaaaattttcatatggtattaagattgtttgttacccatccaacaaggcttcttcctccaagtcttttgtctg |
2970085 |
T |
|
| Q |
118 |
tagttctcattccagtgataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccatattctgcatattctggtgccaa |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2970086 |
tagttctcattccagtaataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccatattctgcatattctggtgccaa |
2970185 |
T |
|
| Q |
218 |
atagccccaggtaccaacaacctcagttgagtgtgtcaagtctttgttgtgagttcgtgctagtccaaaatctccaatctaata-----atcacgaaaga |
312 |
Q |
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| T |
2970186 |
ataaccccaggtaccaacaacttcagttgagtgtgtcaagtctttgttgtgagttcgtgctagtccaaaatctccaatctaataatttcatcacgaaaga |
2970285 |
T |
|
| Q |
313 |
aaaatattagtcttaacaaaattcaactgttctttgtttggatgttttcattctgaaagtaaacacacaacttcagttgagtgtgttcttttagaccaaa |
412 |
Q |
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| T |
2970286 |
aaagtattagtcttaacaaaattcaactgttctttgtttggatgttttcattctgaaagtaaacacacaacttcagttgagtgtgttatttgaaaccaaa |
2970385 |
T |
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| Q |
413 |
cccacatat-----ag-------atggattaccaatggttgaagatcatgtgttacaaggatattgtttggtcggacatctctgtgtattacgttatttt |
500 |
Q |
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| T |
2970386 |
cacacatattctaaagttgatgtattaattaccaatggttgaagatcatgtgttacaaggatattgtttggtctgacatctctgtgtattatgttatttt |
2970485 |
T |
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| Q |
501 |
tgtgcaagtata |
512 |
Q |
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|||||| ||||| |
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| T |
2970486 |
tgtgcaggtata |
2970497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 2925368 - 2925491
Alignment:
| Q |
97 |
ttcctccaagtcttttgtctgtagttctcattccagtgataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccata |
196 |
Q |
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||||||||||||||||||| ||||| |||||||| || || |||| | || ||||||||||||||||||||||||||| || |||| || || ||||| |
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| T |
2925368 |
ttcctccaagtcttttgtcagtagtcctcattccggttattagctcaacaagaaccactccaaaagaatatacatctgttttatttgatactttaccata |
2925467 |
T |
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| Q |
197 |
ttctgcatattctggtgccaaata |
220 |
Q |
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| T |
2925468 |
tgctgcatattctggggcccaata |
2925491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 249
Target Start/End: Complemental strand, 16330775 - 16330599
Alignment:
| Q |
73 |
ttgttacccatccaacaaggcttcttcctccaagtcttttgtctgtagttctcattccagtgataagctgtaataggaccactccaaaagaatatacatc |
172 |
Q |
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||||||||||||| ||||| ||| | ||||| |||||||||||| || |||||||| || || | ||| | || || |||||||| ||||| ||||| |
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| T |
16330775 |
ttgttacccatcccacaagacttttgtgtccaattcttttgtctgtggtcctcattcctgttattaactgaagaagcactactccaaaggaatacacatc |
16330676 |
T |
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| Q |
173 |
tgttctacttgacaccttgccatattctgcatattctggtgccaaatagccccaggtaccaacaacctcagttgagt |
249 |
Q |
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| T |
16330675 |
tgacttggttgacactttaccagattctgcatattctggtgccatataccctaatgttccaacaacatctgttgagt |
16330599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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