View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3745_low_5 (Length: 524)
Name: NF3745_low_5
Description: NF3745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3745_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 51937759 - 51937996
Alignment:
| Q |
18 |
tatcactaacatcaaatgctgttgaaataagaggactatgctggtgatgatccacgtgtgaactactccctttgctggctgggtctcctttcaccacctt |
117 |
Q |
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| T |
51937759 |
tatcactaacatcaaatgctgttgaaataagaggactatgctggtgatgatccacgtgtgaactactccctttgctggctgggtctcctttcaccacctt |
51937858 |
T |
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| Q |
118 |
aggtcctgtctcccttgtcaacgacgccaacgattcactgatcgatccattattgattaaacacaaaattagtattaattcaattcatatatagcatcga |
217 |
Q |
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| T |
51937859 |
aggtcctgtctcccttgtcaacgacgccaacgattcact----gatccattattaattaaacacaaaattagtattaattcaattcatatatagcatcga |
51937954 |
T |
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| Q |
218 |
tcatgaatataataatatgtaggtacgtacctgatggattgaa |
260 |
Q |
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| T |
51937955 |
tcattaatataataata-atatgtaggtacctgatggattgaa |
51937996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 292 - 506
Target Start/End: Original strand, 51938016 - 51938239
Alignment:
| Q |
292 |
gcgttcctcttcagaaatagaggcaaagggagattgtgttgttgttgatgatctgataggagtgttaggagttgactt---------cttcttctgtaga |
382 |
Q |
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| T |
51938016 |
gcgttcctcttcagaaatagaggcaaagggagattgtgttgttgttgatgatctgataggagtgttaggagttgacttgttgttcttcttcttctgtaga |
51938115 |
T |
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| Q |
383 |
gaatgaagttcgtgaattgtttgggctttcaccgatgggctgctgtcgtcgtgacatatctccgaagaatccataactttcttgtgggtttggatcatgg |
482 |
Q |
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| T |
51938116 |
gaatgaagttcgtgaattgtttgggctttcaccgatgggctgctgtcgtcgtgacatatctctgaagaatccataactttcttgtgggtttggatcatgg |
51938215 |
T |
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| Q |
483 |
gtagcccacgacgcccaacaacgt |
506 |
Q |
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| T |
51938216 |
gtagcccacgacgcccaacaacgt |
51938239 |
T |
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