View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3745_low_6 (Length: 515)
Name: NF3745_low_6
Description: NF3745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3745_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 221 - 503
Target Start/End: Original strand, 36756153 - 36756426
Alignment:
| Q |
221 |
gtagaaaatgactataagttaataactaacatatgtatgtatgtgttgtaacgttgaattgactcccttcaaattagattcgttaattagtc-cctaatt |
319 |
Q |
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| T |
36756153 |
gtagaaaaggactataagttaataactaacatatgtatgt----gttgtaacgttgaattgactcccttcaaattagattcgttaattagtctcctaatt |
36756248 |
T |
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| Q |
320 |
gcatgatgatttgagaaaatgtaaacaagacccaagaagagtggtcaattacgtaacaattctt---atatttggatttattagac-aagttcaaaattg |
415 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |
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| T |
36756249 |
gcatgatgatttgagaaaatgtaaacaagacccaaaa---gtggtcaattacgtaacaattcttcttatatttggattta---gactaagttcaaaattg |
36756342 |
T |
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| Q |
416 |
actccaaataagcaagcagccgtgtttggtttttcatttcttccagaagcaagcaagcaagcaactgttcccatcacacacacgccta |
503 |
Q |
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| T |
36756343 |
actccaaacaagcaagcagccgtgtttggtttttcatttcttccag----aagcaagcaagcaactgttcccatcacacacacgccta |
36756426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 36755727 - 36755787
Alignment:
| Q |
17 |
aattatttattatctcattttatctatttctttattggcgataaataactaaaaatattat |
77 |
Q |
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| T |
36755727 |
aattatttattatctcattttatctatttctttatcggcgataaataactaaaaatattat |
36755787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 36755881 - 36755937
Alignment:
| Q |
171 |
gtagattttaaaagtatccattttgttggatcagatgaaaatggtgatttgtagaaa |
227 |
Q |
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| T |
36755881 |
gtagattttaaaagtatccattttgttggataagatgaaaatggtggtttgtagaaa |
36755937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 9968316 - 9968348
Alignment:
| Q |
17 |
aattatttattatctcattttatctatttcttt |
49 |
Q |
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| T |
9968316 |
aattatttattatctcattttatctatttcttt |
9968348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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