View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3745_low_7 (Length: 459)
Name: NF3745_low_7
Description: NF3745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3745_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 43742569 - 43742995
Alignment:
| Q |
18 |
cttcaaaacgacaacatctttttccttcatttcttgctacttgaactcgtcttctatgtgatggtccaagccggacaagttgccaaagtcgttgtcccct |
117 |
Q |
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| T |
43742569 |
cttcaaaacgacaacgtctttttccttcatttcttgctacttgaactcgtcttctatgtgatggtccaagccggacaagttgccaaagtcgttgtcccct |
43742668 |
T |
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| Q |
118 |
tcatcgttgtcgtcgaagtggtggaggaatctccaagctcatcaagggagttgagatctttgtcgccatcattgttgttttggaaagnnnnnnn-gcaaa |
216 |
Q |
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| T |
43742669 |
tcatcgttgtcgtcgaagtggtggaggaatctccaagctcatcaagggagttgagatcttcgtcgccatcattgttgttttggaaagtcttttttgcaaa |
43742768 |
T |
|
| Q |
217 |
gtgaaagagaaggtggtggaggacttcatccattataatgtgaatca-ttacaaacactaagatatatctttatctacatgacaataccttatatttctc |
315 |
Q |
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| T |
43742769 |
gtgaaagagaaggtggtggaggacttcatccattataatgtgaatcaattacaaacactaagatatatctttatctacatgacaataccttatatttctc |
43742868 |
T |
|
| Q |
316 |
attagaaagatccgcgtaactaagtctcgttgcatttccaaagtctgtctacaacttagtactttgaagagtttacatcaatgataagatatttgatgta |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
43742869 |
attagaaagatccgcgtaactaagtctcgttgcatttccaaagtctgtctacaacttggtactttgaagagtttacatcaatgataagata------caa |
43742962 |
T |
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| Q |
416 |
gtacggagtttactcacacaaagagaatgatga |
448 |
Q |
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|||| ||||||||||||||| |||||||||||| |
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| T |
43742963 |
gtacagagtttactcacacagagagaatgatga |
43742995 |
T |
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