View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3746_high_2 (Length: 414)
Name: NF3746_high_2
Description: NF3746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3746_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 270 - 399
Target Start/End: Original strand, 43528117 - 43528246
Alignment:
| Q |
270 |
tcctgaattgagaaattctgaatcggtaaaattaaatcaaagggaaaaccctaaaatgagaaatgttttcaagaaaaccctaaagtaataaattctgaat |
369 |
Q |
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| T |
43528117 |
tcctgaattgagaaattctgaatcggtaaaattaaatcaaagggaaaaccctaaaatgagaaatgttttcaagaaaaccctaaagtaataaattctgaat |
43528216 |
T |
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| Q |
370 |
agataaggtaaaaatcgaatggaaaagaaa |
399 |
Q |
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| T |
43528217 |
agataaggtaaaaatcgaacggaaaagaaa |
43528246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 43527854 - 43528004
Alignment:
| Q |
11 |
gacatcatcactgggttctcttttccttttctacaaccctccatcatcatgtagtgagcgtaatcaaaatccatcgctgatcggtttggtatgaacctat |
110 |
Q |
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| T |
43527854 |
gacatcaacgctggattctcttttccttttctacaaccctccatcatcatgtagtgagcgtaatcaaaatccatcgctgatcggtttggtatgaacctat |
43527953 |
T |
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| Q |
111 |
ccaactgtttcnnnnnnncaaaaccctgaattgagcaattctgaatccata |
161 |
Q |
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| T |
43527954 |
ccaactgtttcaaaaaaacaaaaccctgaattgagcaattctgaatccata |
43528004 |
T |
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