View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3746_low_1 (Length: 494)

Name: NF3746_low_1
Description: NF3746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3746_low_1
NF3746_low_1
[»] chr8 (5 HSPs)
chr8 (18-323)||(15169702-15170007)
chr8 (399-491)||(15170050-15170142)
chr8 (18-104)||(15169624-15169715)
chr8 (132-191)||(32109599-32109658)
chr8 (352-383)||(15170007-15170038)
[»] chr6 (2 HSPs)
chr6 (132-221)||(12026559-12026646)
chr6 (132-221)||(12033479-12033566)
[»] scaffold0591 (1 HSPs)
scaffold0591 (137-230)||(2131-2224)
[»] chr5 (4 HSPs)
chr5 (132-229)||(22693154-22693251)
chr5 (133-204)||(33469296-33469367)
chr5 (132-218)||(34307091-34307175)
chr5 (132-204)||(26604743-26604815)
[»] chr4 (1 HSPs)
chr4 (132-221)||(12587101-12587189)
[»] chr3 (2 HSPs)
chr3 (132-223)||(3163285-3163376)
chr3 (134-169)||(29635568-29635603)
[»] chr2 (3 HSPs)
chr2 (149-221)||(37058380-37058452)
chr2 (132-204)||(39091972-39092044)
chr2 (132-179)||(20530413-20530460)
[»] chr7 (2 HSPs)
chr7 (134-222)||(28008230-28008318)
chr7 (132-227)||(1321942-1322036)
[»] scaffold0294 (1 HSPs)
scaffold0294 (132-169)||(512-549)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 15169702 - 15170007
Alignment:
Q  18 ataataatacaacccatgtttctttggtggatagtttctttgtttgtcataatatgtatgtcctc-----gacacaacataataatacaacctaatcttc 112  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||      |||||||||||||||||||| |||||||||    
T  15169702 ataataatacaacccatatttatttggtggttagtttctttgtttgtcataatatgtatgtcctataattgacacaacataataatacaatctaatcttc 15169801  T
Q  113 atctgaatgaatcaaacactgttattggagtggtgactgatttgaatttgaagaaatatggtgttggatgatttaagaggtttttagagattcagttttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |      |||||||    
T  15169802 atctgaatgaatcaaacactgttattggagtggtgactgatttgaatttgaagaaatatagtgttggatgatttgagagggttttcg------agttttg 15169895  T
Q  213 tgaaatggaaaaaatgagttgctagttatgcttgaaaagaacgtaacaacaattaactg-cgctaggacaacaaaaattaactgccgttgggtacggagc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| |||  |||    
T  15169896 tgaaatggaaaaaatgagttgctagttatgcttgaaaagaacgtaacaacaattaactgccgctaggacaaccaaaattaattgccgttggatacaaagc 15169995  T
Q  312 agccgttaactg 323  Q
    ||| ||||||||    
T  15169996 agcagttaactg 15170007  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 399 - 491
Target Start/End: Original strand, 15170050 - 15170142
Alignment:
Q  399 cacaatccaacccaaacacatgtcctcttctctatctcaatggaaccacccactctccattttctccttctccgattctgcctttgcttctcc 491  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  15170050 cacaattcaacccaaacacatgtcctcttctctatctcaatggaaccacccactctccattttctccatctccgattctgccattgcttctcc 15170142  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 15169624 - 15169715
Alignment:
Q  18 ataataatacaacccatgtttctttggtggatagtttctttgtttgtcataatatgtatgtcc-----tcgacacaacataataatacaacc 104  Q
    ||||||||||||| ||| ||| |||||||| |||||||||||||||||||||||| |||||||     | ||||||||||||||||||||||    
T  15169624 ataataatacaactcatatttatttggtggttagtttctttgtttgtcataatatctatgtcctattattgacacaacataataatacaacc 15169715  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 32109599 - 32109658
Alignment:
Q  132 tgttattggagtggtgactgatttgaatttgaagaaatatggtgttggatgatttaagag 191  Q
    ||||||||||||  || ||||||||| ||||||||||| |||||||||||||||| ||||    
T  32109599 tgttattggagttttgcctgatttgagtttgaagaaatttggtgttggatgatttgagag 32109658  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 383
Target Start/End: Original strand, 15170007 - 15170038
Alignment:
Q  352 ggagaagagaaattttcaaacactccaaacca 383  Q
    ||||||||||||||||||||||||||||||||    
T  15170007 ggagaagagaaattttcaaacactccaaacca 15170038  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 12026646 - 12026559
Alignment:
Q  132 tgttattggagtggtgactgatttgaatttgaagaaatatggtgttggatgatttaagaggtttttagagattcagttttgtgaaatgga 221  Q
    |||||||| ||||||||||||| |||||||||||| || |||||||||||||||  ||||  ||||||||||| ||||||||||||||||    
T  12026646 tgttattgaagtggtgactgatatgaatttgaagatatttggtgttggatgatt--agagagttttagagattgagttttgtgaaatgga 12026559  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 12033566 - 12033479
Alignment:
Q  132 tgttattggagtggtgactgatttgaatttgaagaaatatggtgttggatgatttaagaggtttttagagattcagttttgtgaaatgga 221  Q
    |||||||| ||||||||||||| |||||||||||| || |||||||||||||||  ||||  ||||||||||| ||||||||||||||||    
T  12033566 tgttattgaagtggtgactgatatgaatttgaagatatttggtgttggatgatt--agagagttttagagattgagttttgtgaaatgga 12033479  T

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Target: scaffold0591 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 2224 - 2131
Alignment:
Q  137 ttggagtggtgactgatttgaatttgaagaaatatggtgttggatgatttaagaggtttttagagattcagttttgtgaaatggaaaaaatgag 230  Q
    |||||||||  | |||||||||||| |||||||||| |||| |||||||| | ||  ||||||||||| |||||||||||||||||||||||||    
T  2224 ttggagtggcaaatgatttgaatttaaagaaatatgatgttagatgatttgaaagagttttagagattgagttttgtgaaatggaaaaaatgag 2131  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 22693154 - 22693251
Alignment:
Q  132 tgttattggagtggtgactgatttgaatttgaagaaatatggtgttggatgatttaagaggtttttagagattcagttttgtgaaatggaaaaaatga 229  Q
    ||||||| | |||||| |||||| |||||||||||||| |||||||||||||||| ||||  |||||||||||  | |||||||||||||| ||||||    
T  22693154 tgttattagggtggtggctgattagaatttgaagaaatttggtgttggatgatttgagagagttttagagattgggatttgtgaaatggaagaaatga 22693251  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 33469296 - 33469367
Alignment:
Q  133 gttattggagtggtgactgatttgaatttgaagaaatatggtgttggatgatttaagaggtttttagagatt 204  Q
    ||||||| ||||||| ||||||||||||||| ||||| |||||||||||||||| ||||  |||||||||||    
T  33469296 gttattgtagtggtggctgatttgaatttgacgaaatttggtgttggatgatttgagagagttttagagatt 33469367  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 34307091 - 34307175
Alignment:
Q  132 tgttattggagtggtgactgatttgaatttgaagaaatatggtgttggatgatttaagaggtttttagagattcagttttgtgaaat 218  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||  |||  ||||||||||| || ||||| ||||    
T  34307091 tgttattgaagtggtggctgatttgaatttgaagaaatttggtgttagatgattt--gagtcttttagagattgagatttgtaaaat 34307175  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 26604743 - 26604815
Alignment:
Q  132 tgttattggagtggtgactgatttgaatttgaagaaatatggtgttggatgatttaagaggtttttagagatt 204  Q
    |||||||| |||| || ||||||||||||| |  |||| |||||||||||||||| ||||  |||||||||||    
T  26604743 tgttattgtagtgatggctgatttgaattttataaaatttggtgttggatgatttgagagaattttagagatt 26604815  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 12587189 - 12587101
Alignment:
Q  132 tgttattggagtggtgactgatttgaatttgaagaaatatggtgttggatgatttaagaggtttttagagattcagttttgtgaaatgga 221  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| |||  | |||||||||| ||||||| ||||||||    
T  12587189 tgttattgaagtggtgtctgatttgaatttgaagaaatatggtgttggatgttttgaga-ttgtttagagattgagttttgggaaatgga 12587101  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 3163285 - 3163376
Alignment:
Q  132 tgttattggagtggtgactgatttgaatttgaagaaatatggtgttggatgatttaagaggtttttagagattcagttttgtgaaatggaaa 223  Q
    |||||||  |||||||| |||||||||||||||||||| |||||||||||||| | ||||  ||||||||||| || ||||| |||||||||    
T  3163285 tgttattaaagtggtgattgatttgaatttgaagaaatgtggtgttggatgatatgagagagttttagagattgagatttgtaaaatggaaa 3163376  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 169
Target Start/End: Original strand, 29635568 - 29635603
Alignment:
Q  134 ttattggagtggtgactgatttgaatttgaagaaat 169  Q
    ||||||||||| ||||||||||||||||||||||||    
T  29635568 ttattggagtgttgactgatttgaatttgaagaaat 29635603  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 37058452 - 37058380
Alignment:
Q  149 ctgatttgaatttgaagaaatatggtgttggatgatttaagaggtttttagagattcagttttgtgaaatgga 221  Q
    |||||||||||||||||| || |||||||||||||||| ||||  ||||||||||  ||||||||||||||||    
T  37058452 ctgatttgaatttgaagagatttggtgttggatgatttgagagagttttagagatcgagttttgtgaaatgga 37058380  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 39091972 - 39092044
Alignment:
Q  132 tgttattggagtggtgactgatttgaatttgaagaaatatggtgttggatgatttaagaggtttttagagatt 204  Q
    |||||||||||||||| |||||||||||||||| |||| || |||| | |||||| |||| ||||||||||||    
T  39091972 tgttattggagtggtgtctgatttgaatttgaaaaaatttgatgtttgttgatttgagagatttttagagatt 39092044  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 20530413 - 20530460
Alignment:
Q  132 tgttattggagtggtgactgatttgaatttgaagaaatatggtgttgg 179  Q
    |||||||| ||||||| ||||||||||||||| ||||| |||||||||    
T  20530413 tgttattgtagtggtggctgatttgaatttgatgaaatttggtgttgg 20530460  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 28008318 - 28008230
Alignment:
Q  134 ttattggagtggtgactgatttgaatttgaagaaatatggtgttggatgatttaagaggtttttagagattcagttttgtgaaatggaa 222  Q
    |||||| ||||||| |||||||||||| ||  |||| |||||||||||||||| ||||  ||||||||||| | | |||||||||||||    
T  28008318 ttattgtagtggtggctgatttgaattcgacaaaatttggtgttggatgatttgagagaattttagagattgaatgttgtgaaatggaa 28008230  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 1321942 - 1322036
Alignment:
Q  132 tgttattggagtggtgactgatttgaatttgaagaaatatggtgttggatgatttaagaggtttttagagattcagttttgtgaaatggaaaaaat 227  Q
    |||||||| ||||||| || ||||||| |||||||||| || ||||||||||||| ||| |  |||||||||| |||| |||||||||||| ||||    
T  1321942 tgttattgtagtggtggcttatttgaacttgaagaaatttgatgttggatgatttgaga-gagtttagagattgagttatgtgaaatggaagaaat 1322036  T

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Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 549 - 512
Alignment:
Q  132 tgttattggagtggtgactgatttgaatttgaagaaat 169  Q
    |||||||||||||||||| |||||||||||||||||||    
T  549 tgttattggagtggtgaccgatttgaatttgaagaaat 512  T

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