View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3746_low_3 (Length: 401)
Name: NF3746_low_3
Description: NF3746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3746_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 5445188 - 5445566
Alignment:
| Q |
18 |
aaacaatcgtgttgagatcattccaaacgaccaagggaaccgtgtcaccccttcttacgttgccttcaccgacactgaaagattaataggcgatgctgcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5445188 |
aaacaatcgtgttgagatcattccaaacgaccaagggaaccgtgtcaccccttcttacgttgccttcactgacactgaaagattaataggcgatgctgcc |
5445287 |
T |
|
| Q |
118 |
aaaaaccaattagccaaaaatccccacaacactgtttttgatgccaaacgtctgattggccgtcgattctctgaccaaacagtccaacaagacataaagc |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5445288 |
aaaaaccaattagccaaatatccccacaacactgtttttgatgccaaacgtctgattggccgtcgattctctgaccaaacagtccaacaagacataaagc |
5445387 |
T |
|
| Q |
218 |
tttggccttttaaagttgttccgaaccacaaagacaaacccatgattgttgtcaattacaaaggccaagagaaacatttttcacctcaagagatatcttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5445388 |
tttggccttttaaagttgttccgaaccacaaagacaaacccatgattgttgtcaattacaaaggccaagagaaacatttttcacctcaagagatatcttc |
5445487 |
T |
|
| Q |
318 |
catggtgttgtctaagttaaaggaagttgctgaaacttatttgggtcatgaagtgaacaatgctgttatctctgctcct |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
5445488 |
catggtgttgtctaagttaaaggaagttgctgaaacttatttgggtcatgaagtgaacaatgctgttatcactgttcct |
5445566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 5441025 - 5440993
Alignment:
| Q |
20 |
acaatcgtgttgagatcattccaaacgaccaag |
52 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
5441025 |
acaatcatgttgagatcattccaaacgaccaag |
5440993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University