View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3747_high_1 (Length: 553)
Name: NF3747_high_1
Description: NF3747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3747_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 49929340 - 49929699
Alignment:
| Q |
18 |
ctttgtttttctgtcatggatatggcagtacttgcactttcttctttgaaggtttgtctttgcaacagagctagagagttatcaaatttgaggatggagg |
117 |
Q |
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| T |
49929340 |
ctttgtttttctgtcatggatatggcagtacttgcactttcttctttgaaggtttgtctttgtaacagagctagagagttatcaaatttgaggatggagg |
49929439 |
T |
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| Q |
118 |
tttaatttgaatgattgttcaggtattgcaaggagaattgctgcttctgggtttggtgtttatgcaatggattttccgggttttggtttatctgaaggat |
217 |
Q |
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| T |
49929440 |
attaatttgaatgattgttcaggtattgcaaggagaattgctgcttctgggtttggtgtttatgcaatggattttccgggttttggtttatctgaaggat |
49929539 |
T |
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| Q |
218 |
tacatggttacataccaagttttgatgatttagtcgatgatgttatagaatactatacaaaaattaaaggtatggacttttattttagcacttgtgatgt |
317 |
Q |
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| T |
49929540 |
tacatggttacataccaagttttgatgatttagtcgatgatgttatagaatactatacaaaaattaaaggtatggacttttattttagcacttgtgatgt |
49929639 |
T |
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| Q |
318 |
taccgtgatcattgttgcaatctatgtgaaaaataagtacttttgtcgaccatgatgtgt |
377 |
Q |
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| T |
49929640 |
taccgtgatcatttttgcaatctatgtgaaaaataagtaattttgtcgaccatgatgtgt |
49929699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 470 - 544
Target Start/End: Original strand, 49929792 - 49929864
Alignment:
| Q |
470 |
ccatcattgatttttaagtaaaggtctgcgaccacaatttgagttctgatattaggacactttcattctctctgc |
544 |
Q |
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| T |
49929792 |
ccatcattgatttttaagtaaaggtctgcgaccacaatttgagttctgatattagg--actttcattctctctgc |
49929864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 135 - 291
Target Start/End: Original strand, 23287968 - 23288124
Alignment:
| Q |
135 |
ttcaggtattgcaaggagaattgctgcttctgggtttggtgtttatgcaatggattttccgggttttggtttatctgaaggattacatggttacatacca |
234 |
Q |
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| T |
23287968 |
ttcaggtgttgcgaggagaattgctgcatctgggtatgctgtttttgcgatggactatccaggttttggactttcagaaggattgcatggttacatacca |
23288067 |
T |
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| Q |
235 |
agttttgatgatttagtcgatgatgttatagaatactatacaaaaattaaaggtatg |
291 |
Q |
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| T |
23288068 |
aacttcgatgatcttgtcgacgatgttatagagcattatacacaaataaaaggtatg |
23288124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 23287785 - 23287830
Alignment:
| Q |
29 |
tgtcatggatatggcagtacttgcactttcttctttgaaggtttgt |
74 |
Q |
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| T |
23287785 |
tgtcatggatatggtgatacttgcacattcttctttgaaggtttgt |
23287830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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