View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3747_low_3 (Length: 370)
Name: NF3747_low_3
Description: NF3747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3747_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 16780439 - 16780653
Alignment:
| Q |
4 |
agagaatgaacaagagtgtcacacaccaacttcatcacgaggtcaaagtagccataattttttggtttgtccaccagctccaaagaaagcaagagtaaca |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16780439 |
agagaatgaacaagagtgtcacacaccaacttcatcacgaggtcaaagtagccataattttttagtttgtccaccagctccaaagaaatcaagagtaaca |
16780538 |
T |
|
| Q |
104 |
caacgcagcaagaattcagctctaccatctcaagtgttctttcaagttcctcacgatctggcttctgtgtttgtgtttcgcaagccaaacattgcaagaa |
203 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16780539 |
caacgcaacaagaattcagctctaccatctcaagtgttctttcaagttcctcacgatctggcttctgtgtttgtgtttcgcaaaccaaacattgcaagaa |
16780638 |
T |
|
| Q |
204 |
gatcagaaatatata |
218 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
16780639 |
gatcagaaatatata |
16780653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 284 - 356
Target Start/End: Original strand, 16780730 - 16780807
Alignment:
| Q |
284 |
ttgttaattcttgtcgttccttgaatatctaa-----gtgttatattttcaatatctaagtgttggaagatacatagt |
356 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16780730 |
ttgtttattcttatcgttccttgaatatctaagctaagtgttatattttcaatatctaagtgttggaagatacatagt |
16780807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 16780693 - 16780735
Alignment:
| Q |
231 |
ctagctagcaattgcaatggtatatatttgaatattattgttt |
273 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
16780693 |
ctagctagcaatggcaatggtatatatttgaatattcttgttt |
16780735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 33795058 - 33794842
Alignment:
| Q |
1 |
aaaagagaatgaacaagagtgtcacacaccaacttcatcacgaggtcaaa--gtagccataattttttggtttgtccaccagctccaaagaaagcaagag |
98 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||||| ||||||||| |||| |
|
|
| T |
33795058 |
aaaagaggatgaacaagagtgtcaaacaccaacttcatcacgaggtcaaattgtaggcat---tttttggtttgcccaccagctcgaaagaaagctagag |
33794962 |
T |
|
| Q |
99 |
taacacaacgcagcaagaattcagctctaccatctcaagtgttctttcaagttcctcacgatctggcttctgtgtttgtgtttcgcaagccaaacattgc |
198 |
Q |
| |
|
|||||| | || |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33794961 |
taacacgaatcaacaagaattcagccccaccatctcaagtgttctttcaagttcctcacgatctggcttctgtgtttgtgtttcgcaagccaaacattgc |
33794862 |
T |
|
| Q |
199 |
aagaagatcagaaatatata |
218 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
33794861 |
aagaagatcataaatatata |
33794842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University