View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3747_low_6 (Length: 240)

Name: NF3747_low_6
Description: NF3747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3747_low_6
NF3747_low_6
[»] scaffold0053 (1 HSPs)
scaffold0053 (9-220)||(2259-2470)
[»] chr5 (38 HSPs)
chr5 (9-218)||(22448330-22448539)
chr5 (79-220)||(33955498-33955639)
chr5 (76-220)||(20036044-20036188)
chr5 (81-220)||(13815371-13815510)
chr5 (78-220)||(11223423-11223564)
chr5 (10-142)||(22457723-22457856)
chr5 (72-220)||(42732575-42732723)
chr5 (79-214)||(20834479-20834614)
chr5 (79-211)||(24244050-24244182)
chr5 (79-211)||(24290674-24290806)
chr5 (72-220)||(26652660-26652808)
chr5 (72-220)||(26924245-26924393)
chr5 (77-220)||(18569085-18569229)
chr5 (77-220)||(22489231-22489375)
chr5 (77-220)||(24422323-24422467)
chr5 (78-220)||(24412875-24413018)
chr5 (68-218)||(30444829-30444980)
chr5 (68-218)||(30454201-30454352)
chr5 (68-218)||(30459259-30459410)
chr5 (135-220)||(37514857-37514942)
chr5 (77-219)||(4635991-4636134)
chr5 (161-218)||(22457666-22457723)
chr5 (78-180)||(22118140-22118243)
chr5 (9-69)||(42732789-42732848)
chr5 (77-203)||(31150651-31150776)
chr5 (9-69)||(26652535-26652594)
chr5 (9-69)||(26924120-26924179)
chr5 (77-203)||(5600624-5600749)
chr5 (77-203)||(5610270-5610395)
chr5 (137-203)||(1693681-1693748)
chr5 (31-69)||(5600523-5600561)
chr5 (31-69)||(5610169-5610207)
chr5 (32-70)||(11223310-11223348)
chr5 (135-203)||(16110986-16111058)
chr5 (32-70)||(20035933-20035971)
chr5 (31-69)||(31150839-31150877)
chr5 (32-70)||(33955715-33955753)
chr5 (31-68)||(17553997-17554034)
[»] chr1 (12 HSPs)
chr1 (9-218)||(21919431-21919640)
chr1 (77-220)||(14272016-14272159)
chr1 (77-214)||(14281888-14282025)
chr1 (77-206)||(3470949-3471078)
chr1 (78-220)||(5378422-5378565)
chr1 (71-220)||(21633620-21633769)
chr1 (78-220)||(26906244-26906386)
chr1 (137-219)||(40999034-40999116)
chr1 (77-109)||(15810094-15810126)
chr1 (78-217)||(30676836-30676976)
chr1 (32-70)||(14272233-14272271)
chr1 (32-70)||(14282099-14282137)
[»] scaffold0334 (1 HSPs)
scaffold0334 (9-218)||(12548-12757)
[»] chr8 (30 HSPs)
chr8 (9-218)||(33592134-33592344)
chr8 (9-218)||(33601773-33601983)
chr8 (9-193)||(42896174-42896359)
chr8 (77-220)||(12915505-12915648)
chr8 (77-220)||(42712176-42712319)
chr8 (77-220)||(20030225-20030368)
chr8 (8-208)||(24633945-24634145)
chr8 (77-220)||(12925400-12925543)
chr8 (77-220)||(20044864-20045007)
chr8 (78-220)||(18143427-18143569)
chr8 (79-215)||(18883163-18883299)
chr8 (78-218)||(25037026-25037166)
chr8 (78-218)||(25051063-25051203)
chr8 (78-220)||(4843720-4843862)
chr8 (77-220)||(12767677-12767822)
chr8 (72-218)||(31575411-31575557)
chr8 (79-211)||(18251877-18252009)
chr8 (79-211)||(18232975-18233107)
chr8 (79-211)||(18242426-18242558)
chr8 (78-220)||(20714116-20714259)
chr8 (137-220)||(7789076-7789159)
chr8 (153-220)||(20714417-20714484)
chr8 (135-217)||(15834055-15834137)
chr8 (9-69)||(31575623-31575682)
chr8 (135-216)||(24096077-24096159)
chr8 (159-215)||(26194048-26194104)
chr8 (32-70)||(12925288-12925326)
chr8 (32-70)||(20030113-20030151)
chr8 (32-70)||(20044752-20044790)
chr8 (32-70)||(42712393-42712431)
[»] chr7 (19 HSPs)
chr7 (43-218)||(13874398-13874572)
chr7 (77-220)||(14644476-14644619)
chr7 (77-220)||(33292175-33292318)
chr7 (77-220)||(14634776-14634919)
chr7 (77-220)||(15947371-15947514)
chr7 (78-220)||(32818043-32818185)
chr7 (78-220)||(9736993-9737135)
chr7 (79-211)||(11634337-11634469)
chr7 (95-220)||(48710005-48710131)
chr7 (68-220)||(7593043-7593196)
chr7 (77-220)||(15174586-15174730)
chr7 (137-218)||(19352589-19352670)
chr7 (10-70)||(32817910-32817969)
chr7 (32-70)||(9736880-9736918)
chr7 (32-70)||(14634993-14635031)
chr7 (32-70)||(14644693-14644731)
chr7 (31-69)||(14777358-14777396)
chr7 (31-69)||(15229496-15229534)
chr7 (32-70)||(28344140-28344178)
[»] scaffold0206 (2 HSPs)
scaffold0206 (77-220)||(2155-2298)
scaffold0206 (32-70)||(2043-2081)
[»] chr6 (12 HSPs)
chr6 (77-220)||(22066339-22066482)
chr6 (77-216)||(23884538-23884677)
chr6 (78-220)||(17512221-17512363)
chr6 (77-220)||(23895614-23895758)
chr6 (77-218)||(10259779-10259920)
chr6 (78-218)||(11421451-11421591)
chr6 (137-220)||(14102414-14102497)
chr6 (137-220)||(18420658-18420741)
chr6 (78-181)||(23110256-23110359)
chr6 (32-70)||(22066227-22066265)
chr6 (32-70)||(23884426-23884464)
chr6 (32-69)||(12415008-12415045)
[»] chr2 (18 HSPs)
chr2 (77-216)||(3396969-3397108)
chr2 (79-220)||(35877564-35877705)
chr2 (79-220)||(35885053-35885194)
chr2 (79-220)||(36724766-36724907)
chr2 (77-220)||(31710464-31710608)
chr2 (77-203)||(22632446-22632571)
chr2 (77-220)||(24022740-24022884)
chr2 (137-220)||(14273311-14273394)
chr2 (77-203)||(1800537-1800662)
chr2 (77-203)||(1791043-1791164)
chr2 (135-206)||(16446668-16446739)
chr2 (31-69)||(1790942-1790980)
chr2 (31-69)||(1800436-1800474)
chr2 (32-70)||(3396857-3396895)
chr2 (31-69)||(22632345-22632383)
chr2 (32-70)||(35877450-35877488)
chr2 (32-70)||(35884939-35884977)
chr2 (32-70)||(36724652-36724690)
[»] chr4 (18 HSPs)
chr4 (77-220)||(20884447-20884590)
chr4 (77-220)||(11482361-11482504)
chr4 (77-220)||(50516496-50516639)
chr4 (77-220)||(37059132-37059276)
chr4 (68-220)||(26812545-26812698)
chr4 (68-220)||(26822012-26822165)
chr4 (77-220)||(3242285-3242429)
chr4 (77-220)||(54689911-54690055)
chr4 (77-220)||(54699342-54699486)
chr4 (137-220)||(3918173-3918256)
chr4 (78-219)||(15842897-15843039)
chr4 (78-203)||(23622964-23623088)
chr4 (10-70)||(50516712-50516771)
chr4 (32-70)||(11482249-11482287)
chr4 (32-70)||(20884664-20884702)
chr4 (32-69)||(23622863-23622900)
chr4 (160-220)||(28256097-28256157)
chr4 (135-214)||(41902536-41902616)
[»] chr3 (27 HSPs)
chr3 (77-218)||(13328278-13328419)
chr3 (79-215)||(5385738-5385874)
chr3 (78-220)||(46305572-46305713)
chr3 (78-220)||(23487088-23487232)
chr3 (77-220)||(24794544-24794688)
chr3 (77-220)||(28367651-28367795)
chr3 (77-220)||(28375469-28375613)
chr3 (77-220)||(28383291-28383435)
chr3 (77-220)||(28351718-28351862)
chr3 (137-219)||(38529176-38529258)
chr3 (135-203)||(19388868-19388936)
chr3 (77-203)||(17529877-17530002)
chr3 (139-220)||(4951702-4951783)
chr3 (78-125)||(7784101-7784148)
chr3 (78-203)||(32877915-32878039)
chr3 (77-203)||(48978714-48978835)
chr3 (77-203)||(48988254-48988375)
chr3 (78-203)||(54624700-54624824)
chr3 (32-70)||(5385624-5385662)
chr3 (31-69)||(17530065-17530103)
chr3 (31-69)||(17535004-17535042)
chr3 (32-70)||(23486975-23487013)
chr3 (32-70)||(46305788-46305826)
chr3 (31-69)||(48978613-48978651)
chr3 (31-69)||(48988153-48988191)
chr3 (23-68)||(19388695-19388740)
chr3 (32-69)||(54624599-54624636)
[»] scaffold0021 (5 HSPs)
scaffold0021 (77-220)||(124093-124236)
scaffold0021 (78-203)||(100028-100152)
scaffold0021 (32-70)||(143103-143141)
scaffold0021 (32-69)||(99927-99964)
scaffold0021 (32-69)||(180850-180887)
[»] scaffold0010 (1 HSPs)
scaffold0010 (79-215)||(257006-257142)
[»] scaffold0040 (2 HSPs)
scaffold0040 (78-220)||(30821-30964)
scaffold0040 (78-219)||(10089-10230)
[»] scaffold0028 (2 HSPs)
scaffold0028 (77-220)||(94429-94573)
scaffold0028 (77-220)||(103870-104014)
[»] scaffold0001 (1 HSPs)
scaffold0001 (137-220)||(408435-408518)
[»] scaffold0482 (1 HSPs)
scaffold0482 (137-220)||(3640-3723)
[»] scaffold0269 (1 HSPs)
scaffold0269 (78-203)||(14830-14954)
[»] scaffold0247 (1 HSPs)
scaffold0247 (77-203)||(24637-24762)
[»] scaffold0223 (1 HSPs)
scaffold0223 (81-193)||(27078-27194)


Alignment Details
Target: scaffold0053 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 2470 - 2259
Alignment:
Q  9 catcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgagataggtgttctggactgatctggtgtgatcaagaccttatagt 108  Q
    ||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2470 catcatcatacaaaagtgtaaactagatctcaagtctattgggcttaatagtttgagataggtgttctggactgatctggtgtgatcaagaccttatagt 2371  T
Q  109 gttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctc 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2370 gttggttagaagtttctaccaactgtatactatagtggataatctcacaagaagtgtggggactagaagtagccggattgggtgaaccaggataactctc 2271  T
Q  209 ctgtgttattct 220  Q
    ||||||||||||    
T  2270 ctgtgttattct 2259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 22448539 - 22448330
Alignment:
Q  9 catcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgagataggtgttctggactgatctggtgtgatcaagaccttatagt 108  Q
    |||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22448539 catcatcatacaagagtgtaaactagatctaaagtctattgggcttaatagtttgagataggtgttctggattgatctggtgtgatcaagaccttatagt 22448440  T
Q  109 gttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctc 208  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  22448439 gttggttagaagtttctaccaactgtatactatagtggataatctcacacgaagtgtggggactggaagtagccggattgggtgaaccaggataactctc 22448340  T
Q  209 ctgtgttatt 218  Q
     |||||||||    
T  22448339 ttgtgttatt 22448330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 79 - 220
Target Start/End: Complemental strand, 33955639 - 33955498
Alignment:
Q  79 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagt 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||    
T  33955639 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggggactggaagt 33955540  T
Q  179 agccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  33955539 agccgggtttggtgaaccaggataactctcctgtgttattct 33955498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 20036044 - 20036188
Alignment:
Q  76 tggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactaga 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||    
T  20036044 tggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactatagtggataatctcacatgatgtgtggggactgga 20036143  T
Q  176 agtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||| || |||||||||||||||||||||| |||||||||    
T  20036144 agtagccgggtttggtgaaccaggataactctcctatgttattct 20036188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 13815510 - 13815371
Alignment:
Q  81 tgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagtag 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||||    
T  13815510 tgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgaatactatagtggataatctcacatgaagtgtggggactggaagtag 13815411  T
Q  181 ccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||| || ||||||||||||||||||||||||||||||||    
T  13815410 ccggatttggtgaaccaggataactctcctgtgttattct 13815371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 11223423 - 11223564
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  11223423 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctacca-ctgtatactataatggataatctcacacgaagtgtggggactggaag 11223521  T
Q  178 tagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||  || |||||||||||||||||||  |||||||||||    
T  11223522 tagccgagtttggtgaaccaggataactcttttgtgttattct 11223564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 22457856 - 22457723
Alignment:
Q  10 atcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgagataggtgttctggactgatctggtgtgatcaagaccttatagtg 109  Q
    ||||||||||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22457856 atcatcatacaagagtgtaaactagatcttaagtctattgggcttaatagtttgagataggtgttctggactgatctggtgtgatcatgaccttatagtg 22457757  T
Q  110 ttggttagaagtttcta-ccaactgtatactata 142  Q
    ||||||||||||||||| ||||||||||||||||    
T  22457756 ttggttagaagtttctacccaactgtatactata 22457723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 42732723 - 42732575
Alignment:
Q  72 gttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggac 171  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | ||| |||||||| |||||||||||||| |||||||||||||    
T  42732723 gttctggactgatctggtgtgatcaagaccttatagtgctagttagaagtttctactagctgaatactatagtggataatctcacacgaagtgtggggac 42732624  T
Q  172 tagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    | ||||||||||| || |||||||||||||||||||| |||||||||||    
T  42732623 tggaagtagccgggtttggtgaaccaggataactctcttgtgttattct 42732575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 20834479 - 20834614
Alignment:
Q  79 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagt 178  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||||||| |||||    
T  20834479 actgatctggtatgatcaagaccttatagtgttggttagaagtttctaccaactgcatactatagtggataatctcacacggagtgtggggactggaagt 20834578  T
Q  179 agccggcttgggtgaaccaggataactctcctgtgt 214  Q
    |||||| || ||||||||||||||||||||||||||    
T  20834579 agccgggtttggtgaaccaggataactctcctgtgt 20834614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 24244182 - 24244050
Alignment:
Q  79 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagt 178  Q
    ||||||| |||||||||||||| || |||||||| |||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||| |||||    
T  24244182 actgatcgggtgtgatcaagacgttgtagtgttgattagaagtttctgccaactgaatactatagtggataatctcacacgaagtgtggggactggaagt 24244083  T
Q  179 agccggcttgggtgaaccaggataactctcctg 211  Q
    |||||| || |||||||||||||||||||||||    
T  24244082 agccggatttggtgaaccaggataactctcctg 24244050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 24290806 - 24290674
Alignment:
Q  79 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagt 178  Q
    ||||||| |||||||||||||| || |||||||| |||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||| |||||    
T  24290806 actgatcgggtgtgatcaagacgttgtagtgttgattagaagtttctgccaactgaatactatagtggataatctcacacgaagtgtggggactggaagt 24290707  T
Q  179 agccggcttgggtgaaccaggataactctcctg 211  Q
    |||||| || |||||||||||||||||||||||    
T  24290706 agccggatttggtgaaccaggataactctcctg 24290674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 220
Target Start/End: Original strand, 26652660 - 26652808
Alignment:
Q  72 gttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggac 171  Q
    |||||| |||||| ||||||||||||||||| |||||| | ||||||||||||||  | ||| |||||||| ||||| |||||||| |||||||||||||    
T  26652660 gttctgaactgatatggtgtgatcaagacctaatagtgctagttagaagtttctattagctgaatactatagtggattatctcacacgaagtgtggggac 26652759  T
Q  172 tagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    | ||||||| | | || |||||||||| |||||||||||||||||||||    
T  26652760 tggaagtagtcaggtttggtgaaccagcataactctcctgtgttattct 26652808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 220
Target Start/End: Original strand, 26924245 - 26924393
Alignment:
Q  72 gttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggac 171  Q
    |||||| |||||| ||||||||||||||||| |||||| | ||||||||||||||  | ||| |||||||| ||||| |||||||| |||||||||||||    
T  26924245 gttctgaactgatatggtgtgatcaagacctaatagtgctagttagaagtttctattagctgaatactatagtggattatctcacacgaagtgtggggac 26924344  T
Q  172 tagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    | ||||||| | | || |||||||||| |||||||||||||||||||||    
T  26924345 tggaagtagtcaggtttggtgaaccagcataactctcctgtgttattct 26924393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 18569085 - 18569229
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  18569085 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 18569182  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  18569183 gaagtagccgggtttggtgaaccaggataactctcctgtgttattct 18569229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 22489231 - 22489375
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    ||||||||||||||||||||||| ||||||||| | || | ||||||||   | |||  |   |||||| |||||||||||||| || |||||||||||     
T  22489231 ggactgatctggtgtgatcaagatcttatagtgctagtcataagtttctgttagcaa--gacaactatagtggataatctcacacgaggtgtggggactg 22489328  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  22489329 gaagtagccgggtttggtgaaccaggataactctcctgtgttattct 22489375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 24422323 - 24422467
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  24422323 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 24422420  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  24422421 gaagtagccggatttggtgaaccaggataactctcctgtgttattct 24422467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 24412875 - 24413018
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggactag 174  Q
    ||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || ||||||||||| |    
T  24412875 gactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactgg 24412972  T
Q  175 aagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||||| || ||||||||||||||||||||||||||||||||    
T  24412973 aagtagccggatttggtgaaccaggataactctcctgtgttattct 24413018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 30444980 - 30444829
Alignment:
Q  68 aggtgttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtg 164  Q
    ||||||| ||||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||    
T  30444980 aggtgttatggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtg 30444883  T
Q  165 tggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttatt 218  Q
    |||||||| ||||||||||| || |||||| |||||||||||||||||||||||    
T  30444882 tggggactggaagtagccgggtttggtgaatcaggataactctcctgtgttatt 30444829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 30454352 - 30454201
Alignment:
Q  68 aggtgttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtg 164  Q
    |||||||  |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||    
T  30454352 aggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtg 30454255  T
Q  165 tggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttatt 218  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||||||||    
T  30454254 tggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 30454201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 30459410 - 30459259
Alignment:
Q  68 aggtgttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtg 164  Q
    |||||||  |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||    
T  30459410 aggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtg 30459313  T
Q  165 tggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttatt 218  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||||||||    
T  30459312 tggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 30459259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 37514942 - 37514857
Alignment:
Q  135 atactataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| ||||||||||||||  | |||||||||||||||||||||||||| | |||||||| |||| |||| |||||||||||    
T  37514942 atactatagtggataatctcacacaaggtgtggggactagaagtagccggctttgatgaaccagtataaatctcatgtgttattct 37514857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 4635991 - 4636134
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    |||||||| |||||||||||||| ||||||||| |||| ||||||||||   | |||  |   |||||| |||||||||||||  || |||||||||||     
T  4635991 ggactgatatggtgtgatcaagatcttatagtgctggtcagaagtttctgttagcaa--gacaactatagtggataatctcacgtgaggtgtggggactg 4636088  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattc 219  Q
     || ||||||| || |||||||||||||||||||| ||||||||||    
T  4636089 aaaatagccgggtttggtgaaccaggataactctcatgtgttattc 4636134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 22457723 - 22457666
Alignment:
Q  161 agtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttatt 218  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||    
T  22457723 agtgtggggactggaagtagccggattgggtgaacaaggataactcttctgtgttatt 22457666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 180
Target Start/End: Complemental strand, 22118243 - 22118140
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttc---taccaactgtatactataatggataatctcacaagaagtgtggggactag 174  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||   || |||  |   ||||||||||||||||||||| || ||||||||||| |    
T  22118243 gactgatctggtgtgatcaagaccttatagtgttattcagaagtttctgttagcaa--gacaactataatggataatctcacacgaggtgtggggactgg 22118146  T
Q  175 aagtag 180  Q
    ||||||    
T  22118145 aagtag 22118140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 42732848 - 42732789
Alignment:
Q  9 catcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgagatag 69  Q
    ||||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||||    
T  42732848 catcatcatacaa-agtgtaaactagatctcaagtctattgggcttaatagtttgagatag 42732789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 31150776 - 31150651
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||| |  |||||||| |  | ||||||||||   | | | |||||||| |||||||||||||| | |||||||||||| ||     
T  31150776 ggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggataatctcacacgtagtgtggggactggac 31150677  T
Q  177 gtagccggcttgggtgaaccaggataa 203  Q
    |||||||| || || ||||||||||||    
T  31150676 gtagccgg-ttaggcgaaccaggataa 31150651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 26652535 - 26652594
Alignment:
Q  9 catcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgagatag 69  Q
    ||||||||||||| |||||||| ||||||||||||||| | | ||||||||||||||||||    
T  26652535 catcatcatacaa-agtgtaaactagatctcaagtctactgggcttaatagtttgagatag 26652594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 26924120 - 26924179
Alignment:
Q  9 catcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgagatag 69  Q
    ||||||||||||| |||||||| ||||||||||||||| | | ||||||||||||||||||    
T  26924120 catcatcatacaa-agtgtaaactagatctcaagtctactgggcttaatagtttgagatag 26924179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 203
Target Start/End: Original strand, 5600624 - 5600749
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||| |  |||||||| |  | ||||||||||   | | | |||||||| |||||||||||||| |  ||||||||||| ||     
T  5600624 ggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggataatctcacacgtggtgtggggactggac 5600723  T
Q  177 gtagccggcttgggtgaaccaggataa 203  Q
    |||||||| || || ||||||||||||    
T  5600724 gtagccgg-ttaggcgaaccaggataa 5600749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 203
Target Start/End: Original strand, 5610270 - 5610395
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||| |  |||||||| |  | ||||||||||   | | | |||||||| |||||||||||||| |  ||||||||||| ||     
T  5610270 ggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggataatctcacacgtggtgtggggactggac 5610369  T
Q  177 gtagccggcttgggtgaaccaggataa 203  Q
    |||||||| || || ||||||||||||    
T  5610370 gtagccgg-ttaggcgaaccaggataa 5610395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 1693748 - 1693681
Alignment:
Q  137 actataatggataatctcacaagaagtgtggggactagaagtagccggc-ttgggtgaaccaggataa 203  Q
    ||||||||||| |||||||||  |||||||||||||||| ||||||  | |||||||||| |||||||    
T  1693748 actataatggaaaatctcacacaaagtgtggggactagacgtagcccacattgggtgaactaggataa 1693681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 5600523 - 5600561
Alignment:
Q  31 ttagatctcaagtctattagacttaatagtttgagatag 69  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  5600523 ttagatctcaagtctattgggcttaatagtttgagatag 5600561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 5610169 - 5610207
Alignment:
Q  31 ttagatctcaagtctattagacttaatagtttgagatag 69  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  5610169 ttagatctcaagtctattgggcttaatagtttgagatag 5610207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 11223310 - 11223348
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  11223310 tagatctcaagtctattgggcttaatagtttgagatagg 11223348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 16110986 - 16111058
Alignment:
Q  135 atactataatggat---aatctcacaagaagtgtggggactagaagtagccggc-ttgggtgaaccaggataa 203  Q
    ||||||||||||||   ||||||||| ||||||| |||||| |||||||||||| || ||||||||| |||||    
T  16110986 atactataatggatggtaatctcacacgaagtgtcgggactggaagtagccggcttttggtgaaccatgataa 16111058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 20035933 - 20035971
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  20035933 tagatctcaagtctattgggcttaatagtttgagatagg 20035971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 31150877 - 31150839
Alignment:
Q  31 ttagatctcaagtctattagacttaatagtttgagatag 69  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  31150877 ttagatctcaagtctattgggcttaatagtttgagatag 31150839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 33955753 - 33955715
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  33955753 tagatctcaagtctattgggcttaatagtttgagatagg 33955715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 17554034 - 17553997
Alignment:
Q  31 ttagatctcaagtctattagacttaatagtttgagata 68  Q
    |||||||||||||||||| | |||||||||||||||||    
T  17554034 ttagatctcaagtctattgggcttaatagtttgagata 17553997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 21919640 - 21919431
Alignment:
Q  9 catcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgagataggtgttctggactgatctggtgtgatcaagaccttatagt 108  Q
    |||||||||||| ||||||||| ||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21919640 catcatcatacatgagtgtaaactagttctcaagtctattgggcttaatagtttgagataggtgttctggactgatctggtgtgatcaagaccttatagt 21919541  T
Q  109 gttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctc 208  Q
    ||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  21919540 gttggttagaagtttctaccaactgaaaactatagtggataatctcacacgaagtgtggggactggaagtagccggattgggtgaatcaggataactctc 21919441  T
Q  209 ctgtgttatt 218  Q
    ||||||||||    
T  21919440 ctgtgttatt 21919431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 14272159 - 14272016
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||    
T  14272159 ggactgatctggtgtgatcaagaccttatagtgtttgttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggggactggaa 14272060  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  14272059 gtagccgggtttggtgaaccaggataactctcctgtgttattct 14272016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 14282025 - 14281888
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||    
T  14282025 ggactgatctggtgtgatcaagaccttatagtgtttgttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggggactggaa 14281926  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgt 214  Q
    |||||||| || ||||||||||||||||||||||||||    
T  14281925 gtagccgggtttggtgaaccaggataactctcctgtgt 14281888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 3471078 - 3470949
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| || |||    
T  3471078 ggactgatctggtgtgatcaagaccttataatgttggttagaagtttctaccaattgtatactacagtggataatctcacatgaagtgtgggggctggaa 3470979  T
Q  177 gtagccggcttgggtgaaccaggataactc 206  Q
    ||| |||| || ||||||||||||||||||    
T  3470978 gtaaccgggtttggtgaaccaggataactc 3470949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 220
Target Start/End: Complemental strand, 5378565 - 5378422
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggactag 174  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||   | |||  |   |||||| |||||||||||||| || ||||||||||| |    
T  5378565 gactgatctggtgtgatcaagaccttatagtgctagttagaagtttctgttagcaa--gacaactatagtggataatctcacacgaggtgtggggactgg 5378468  T
Q  175 aagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||||| || ||||||||||||||| ||||||||||||||||    
T  5378467 aagtagccgggtttggtgaaccaggataattctcctgtgttattct 5378422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 220
Target Start/End: Original strand, 21633620 - 21633769
Alignment:
Q  71 tgttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtgggga 170  Q
    ||||| ||||||||||||||||| |||||||||||| || | || |||||||||||| |   | |||||||| ||||||||||||||| |||||||||||    
T  21633620 tgttccggactgatctggtgtgaccaagaccttataatgctagtcagaagtttctactagtagaatactatagtggataatctcacaaaaagtgtgggga 21633719  T
Q  171 ctagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||| |||||||| || |||||||||| |||  | || |||||||||||    
T  21633720 ctagacgtagccgggtttggtgaaccagaatatttatcttgtgttattct 21633769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 220
Target Start/End: Complemental strand, 26906386 - 26906244
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    |||||||||||||||| ||||| ||||||||| | || ||||||||||   |||   ||| ||||||||||||||||||| || || |||||||||||||    
T  26906386 gactgatctggtgtgaccaagaacttatagtgctagtcagaagtttctgttaacaagatattataatggataatctcacacgaggtatggggactagaag 26906287  T
Q  178 tagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||| | || ||||||||||||||| |||| |||||||||||    
T  26906286 tagcctggtttggtgaaccaggataaatctcgtgtgttattct 26906244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 40999116 - 40999034
Alignment:
Q  137 actataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattc 219  Q
    |||||| |||||||||||||| || ||||||||||| ||||| | ||| || |||||||||||||||||||  ||||||||||    
T  40999116 actatagtggataatctcacacgaggtgtggggactggaagttgtcgggtttggtgaaccaggataactcttatgtgttattc 40999034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 15810126 - 15810094
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtg 109  Q
    |||||||||||||||||||||||||||||||||    
T  15810126 ggactgatctggtgtgatcaagaccttatagtg 15810094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 30676836 - 30676976
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    ||||||||| |||||||||||| | ||||||| |  | | ||||||||   | ||| ||| | ||||||||||||||||| ||||||||||||||  |||    
T  30676836 gactgatcttgtgtgatcaagaacatatagtgctattcataagtttcttatagctgaatattgtaatggataatctcacacgaagtgtggggactgaaag 30676935  T
Q  178 tagccggc-ttgggtgaaccaggataactctcctgtgttat 217  Q
    ||| | || ||| |||||||| ||||| |||  ||||||||    
T  30676936 tagtctgctttgtgtgaaccatgataaatcttgtgtgttat 30676976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 14272271 - 14272233
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  14272271 tagatctcaagtctattgggcttaatagtttgagatagg 14272233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 14282137 - 14282099
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  14282137 tagatctcaagtctattgggcttaatagtttgagatagg 14282099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 12757 - 12548
Alignment:
Q  9 catcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgagataggtgttctggactgatctggtgtgatcaagaccttatagt 108  Q
    |||||||||||||||||||||| ||| ||||||||||||| | | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12757 catcatcatacaagagtgtaaactagttctcaagtctattgggcgtaatagtttgagataggtgttctggactaatctggtgtgatcaagaccttatagt 12658  T
Q  109 gttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctc 208  Q
    ||||||||||||||||||||||||  | |||||| |||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  12657 gttggttagaagtttctaccaactaaaaactatagtggataatctcacacgaagtgtagggactggaagtagccggattgggtgaaccaggataactctc 12558  T
Q  209 ctgtgttatt 218  Q
    || |||||||    
T  12557 ctatgttatt 12548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 33592344 - 33592134
Alignment:
Q  9 catcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgaga-taggtgttctggactgatctggtgtgatcaagaccttatag 107  Q
    |||||||||||||||||||||  ||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  33592344 catcatcatacaagagtgtaatctagttctcaagtctattgggcttaatagtttgagaataggtgttctggactgatctagtgtgatcaagaccttatag 33592245  T
Q  108 tgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactct 207  Q
    ||||||| ||||||||||  |||||| | |||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  33592244 tgttggtcagaagtttctgtcaactgaaaactatagtggataatctcacacgaagtgtggggactggaagtagccggattgggtgaaccaggataactct 33592145  T
Q  208 cctgtgttatt 218  Q
    |||||||||||    
T  33592144 cctgtgttatt 33592134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 33601983 - 33601773
Alignment:
Q  9 catcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgaga-taggtgttctggactgatctggtgtgatcaagaccttatag 107  Q
    |||||||||||||||||||||  ||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  33601983 catcatcatacaagagtgtaatctagttctcaagtctattgggcttaatagtttgagaataggtgttctggactgatctagtgtgatcaagaccttatag 33601884  T
Q  108 tgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactct 207  Q
    ||||||| ||||||||||  |||||| | |||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  33601883 tgttggtcagaagtttctgtcaactgaaaactatagtggataatctcacacgaagtgtggggactggaagtagccggattgggtgaaccaggataactct 33601784  T
Q  208 cctgtgttatt 218  Q
    |||||||||||    
T  33601783 cctgtgttatt 33601773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 42896359 - 42896174
Alignment:
Q  9 catcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgaga-taggtgttctggactgatctggtgtgatcaagaccttatag 107  Q
    |||||||||||||||||||||  ||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42896359 catcatcatacaagagtgtaatctagttctcaagtctattgggcttaatagtttgagaataggtgttctggactgatctggtgtgatcaagaccttatag 42896260  T
Q  108 tgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtga 193  Q
    ||||||||||||||||||| |||||| |  ||||| |||||||||||||| ||||||||| |||| ||||||||||| ||||||||    
T  42896259 tgttggttagaagtttctatcaactgaaatctatagtggataatctcacacgaagtgtggagactggaagtagccggattgggtga 42896174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 12915505 - 12915648
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||    
T  12915505 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggggactggaa 12915604  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  12915605 gtagccgggtttggtgaaccaggataactctcctgtgttattct 12915648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 42712319 - 42712176
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||    
T  42712319 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggggactggaa 42712220  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  42712219 gtagccgggtttggtgaaccaggataactctcctgtgttattct 42712176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 20030225 - 20030368
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| |||    
T  20030225 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttataccaactgtatactatagtggataatctcacacgaagtgtggggactggaa 20030324  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| || |||||||||||||||||||| |||||||||||    
T  20030325 gtagccgggtttggtgaaccaggataactctcttgtgttattct 20030368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 24633945 - 24634145
Alignment:
Q  8 acatcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgagataggtgttctggactgatctggtgtgatcaagaccttatag 107  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |  ||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||    
T  24633945 acatcatcataaaagagtgtaaactagatctcaagtctattgggtttaatagtttgggataggagttatggactgatctggtgtgatcaagaccttatag 24634044  T
Q  108 tgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactct 207  Q
    || | ||||||||||||||| | ||| |||||||| |||||||| ||||| |||||||||||||| ||||||| ||| || |  ||||||||||||||||    
T  24634045 tgctagttagaagtttctactagctgaatactatagtggataatatcacacgaagtgtggggactggaagtagtcgggtttgaggaaccaggataactct 24634144  T
Q  208 c 208  Q
    |    
T  24634145 c 24634145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 12925400 - 12925543
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||    
T  12925400 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggggactggaa 12925499  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||| ||| ||  |||||||||||||||||||||||||||||||    
T  12925500 gtagtcgggtttcgtgaaccaggataactctcctgtgttattct 12925543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 20044864 - 20045007
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||| ||     
T  20044864 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactatcgtggataatctcacacgaagtgtggggactggat 20044963  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| || |||||||||||||||||||| |||||||||||    
T  20044964 gtagccgggtttggtgaaccaggataactctcatgtgttattct 20045007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 78 - 220
Target Start/End: Complemental strand, 18143569 - 18143427
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| |||||||||||||| |||||||||||||| ||||    
T  18143569 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttttaccaactgaatgctatagtggataatctcacacgaagtgtggggactggaag 18143470  T
Q  178 tagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||| || ||||||||| ||||||||||||||||||||||    
T  18143469 tagccggatttggtgaaccaagataactctcctgtgttattct 18143427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 18883299 - 18883163
Alignment:
Q  79 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagt 178  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||    
T  18883299 actgatctggtgtgatcaagactttatagtgttggttagaattttctaccaactgaatactatagtggataatctcacacgaagtgtggggactggaagt 18883200  T
Q  179 agccggcttgggtgaaccaggataactctcctgtgtt 215  Q
    |||||| || |||||||||||||||||||||||||||    
T  18883199 agccggatttggtgaaccaggataactctcctgtgtt 18883163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 25037166 - 25037026
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||    
T  25037166 gactgatctggtgtgatcaagactttatagtgttggttagaagtttctaccaactgaatactatagtggataatctcacacgaagtgtggggactggaag 25037067  T
Q  178 tagccggcttgggtgaaccaggataactctcctgtgttatt 218  Q
    ||||| | |||||||||||| |||||||||| |||||||||    
T  25037066 tagccagattgggtgaaccaagataactctcttgtgttatt 25037026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 25051203 - 25051063
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||    
T  25051203 gactgatctggtgtgatcaagacattatagtgttggttagaagtttctaccaactgaatactatagtggataatctcacacgaagtgtggggactggaag 25051104  T
Q  178 tagccggcttgggtgaaccaggataactctcctgtgttatt 218  Q
    ||||| | |||||||||||| |||||||||| |||||||||    
T  25051103 tagccagattgggtgaaccaagataactctcttgtgttatt 25051063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 78 - 220
Target Start/End: Complemental strand, 4843862 - 4843720
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||    
T  4843862 gactgatctggtgtgatcaagaccttatagtcttggttagaaatttctaccaactgaatactatagtggataatctcacacgaagtgtggggactggaag 4843763  T
Q  178 tagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||| ||  ||||||||||||||||||||| |||||||||    
T  4843762 tagccggatttagtgaaccaggataactctcctttgttattct 4843720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 12767677 - 12767822
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggac--tag 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||  | |    
T  12767677 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgaatactatagtggataatctcacacgaaatgtggggactgtgg 12767776  T
Q  175 aagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||| ||||  | ||||||||||||||||||||||||||||||||    
T  12767777 aagtaaccgggattggtgaaccaggataactctcctgtgttattct 12767822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 31575557 - 31575411
Alignment:
Q  72 gttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggac 171  Q
    ||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| | ||| |||||||| |||||||||||||| |||||||||||||    
T  31575557 gttctggactgatttggtgtgatcaagaccttatagtgctagttagaagtttctactagctgaatactatagtggataatctcacacgaagtgtggggac 31575458  T
Q  172 tagaagtagccggcttgggtgaaccaggataactctcctgtgttatt 218  Q
    | ||||||||||| || |||||||||||||||||||| |||||||||    
T  31575457 tggaagtagccggatttggtgaaccaggataactctcttgtgttatt 31575411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 18251877 - 18252009
Alignment:
Q  79 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagt 178  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||| |||||    
T  18251877 actgatcgggtgtgatcaagacgttatagtgttggttagaagtttctgccaactgaatactatagtggataatctcacacgaagtgtggggactggaagt 18251976  T
Q  179 agccggcttgggtgaaccaggataactctcctg 211  Q
    |||||| || |||||| ||||||||||||||||    
T  18251977 agccggatttggtgaatcaggataactctcctg 18252009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 18232975 - 18233107
Alignment:
Q  79 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagt 178  Q
    ||||||| |||||||||||||| || |||||||| |||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||| |||||    
T  18232975 actgatcgggtgtgatcaagacgttgtagtgttgattagaagtttctgccaactgaatactatagtggataatctcacacgaagtgtggggactggaagt 18233074  T
Q  179 agccggcttgggtgaaccaggataactctcctg 211  Q
    |||||| || |||||||||||||||||||||||    
T  18233075 agccggatttggtgaaccaggataactctcctg 18233107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 18242426 - 18242558
Alignment:
Q  79 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagt 178  Q
    ||||||| |||||||||||||| || |||||||| |||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||| |||||    
T  18242426 actgatcgggtgtgatcaagacgttgtagtgttgattagaagtttctgccaactgaatactatagtggataatctcacacgaagtgtggggactggaagt 18242525  T
Q  179 agccggcttgggtgaaccaggataactctcctg 211  Q
    |||||| || |||||||||||||||||||||||    
T  18242526 agccggatttggtgaaccaggataactctcctg 18242558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 20714116 - 20714259
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggactag 174  Q
    |||||||||||||||||||||| ||||||||| | || ||||||||||   | |||  |   ||||||||||||||| ||||| || ||||||||||| |    
T  20714116 gactgatctggtgtgatcaagatcttatagtgctagtcagaagtttctgttagcaa--gacaactataatggataatgtcacacgaggtgtggggactgg 20714213  T
Q  175 aagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||||| || |||||||||||||||||||| |||||||||||    
T  20714214 aagtagccgggtttggtgaaccaggataactctcatgtgttattct 20714259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 7789159 - 7789076
Alignment:
Q  137 actataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||| |||||||||||||| || ||||||||||| ||||||||||| || |||||||||| |||| ||||||||||||||||    
T  7789159 actatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccagaataattctcctgtgttattct 7789076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 20714417 - 20714484
Alignment:
Q  153 tcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||| || ||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||    
T  20714417 tcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcatgtgttattct 20714484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 15834055 - 15834137
Alignment:
Q  135 atactataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttat 217  Q
    ||||||||||||||||||||||| || ||||| |||||  |||||||||| || ||||||||| ||||| |||| ||||||||    
T  15834055 atactataatggataatctcacacgaggtgtgtggactgaaagtagccggatttggtgaaccaagataaatctcttgtgttat 15834137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 31575682 - 31575623
Alignment:
Q  9 catcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgagatag 69  Q
    ||||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||||    
T  31575682 catcatcatacaa-agtgtaaactagatctcaagtctattgggcttaatagtttgagatag 31575623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 24096159 - 24096077
Alignment:
Q  135 atactataatggataatctcacaagaagtgtgggg-actagaagtagccggcttgggtgaaccaggataactctcctgtgtta 216  Q
    |||||||| |||||||||||||| || |||||||| ||| ||||||| ||  || |||||||||| |||| ||||||||||||    
T  24096159 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttggtgaaccagaataaatctcctgtgtta 24096077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 26194104 - 26194048
Alignment:
Q  159 gaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgtt 215  Q
    ||||||||||||||||||||||  || || | |||||||||||||||||| ||||||    
T  26194104 gaagtgtggggactagaagtagttgggtttgatgaaccaggataactctcatgtgtt 26194048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 12925288 - 12925326
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  12925288 tagatctcaagtctattgggcttaatagtttgagatagg 12925326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 20030113 - 20030151
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  20030113 tagatctcaagtctatttggcttaatagtttgagatagg 20030151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 20044752 - 20044790
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  20044752 tagatctcaagtctattgggcttaatagtttgagatagg 20044790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 42712431 - 42712393
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  42712431 tagatctcaagtctattgggcttaatagtttgagatagg 42712393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 13874398 - 13874572
Alignment:
Q  43 tctattagacttaatagtttgagataggtgttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactata 142  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  13874398 tctattgggcttaatagtttgagataggtgttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgaaaactata 13874497  T
Q  143 atggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttatt 218  Q
     |||||||||||||| |||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||    
T  13874498 gtggataatctcacacgaagtgtggggactggaagtag-cggattgggtgaaccaggataactctcctgtgttatt 13874572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 14644619 - 14644476
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||    
T  14644619 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggggactggaa 14644520  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  14644519 gtagccgggtttggtgaaccaggataactctcctgtgttattct 14644476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 33292318 - 33292175
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||    
T  33292318 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggggactggaa 33292219  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  33292218 gtagccgggtttggtgaaccaggataactctcctgtgttattct 33292175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 14634919 - 14634776
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| |||    
T  14634919 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccagctgcatactatagtggataatctcacacgaagtgtggggactggaa 14634820  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  14634819 gtagccgggtttggtgaaccaggataactctcctgtgttattct 14634776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 15947514 - 15947371
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |||| |||    
T  15947514 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggtgactggaa 15947415  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  15947414 gtagccgggtttggtgaaccaggataactctcctgtgttattct 15947371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 32818043 - 32818185
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||  ||||    
T  32818043 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgaatactatagtggataatctcacacgaagtgtggggaccggaag 32818142  T
Q  178 tagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||| || ||||||||||||||||||||||||||||||||    
T  32818143 tagccgggtttggtgaaccaggataactctcctgtgttattct 32818185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 9736993 - 9737135
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  9736993 gactgatctggtgtgatcaaggccttatagtgttggttagaagtttctacaaactgaatactataatggataatctcacacgaagtgtggggactggaag 9737092  T
Q  178 tagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||| ||  |||||||||||||||||||||||||||||||    
T  9737093 tagccgggtttagtgaaccaggataactctcctgtgttattct 9737135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 11634469 - 11634337
Alignment:
Q  79 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagt 178  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||| |||||    
T  11634469 actgatcgggtgtgatcaagacgttatagtgttggttagaagtttctgccaactgaatactatagtggataatctcacacgaagtgtggggactggaagt 11634370  T
Q  179 agccggcttgggtgaaccaggataactctcctg 211  Q
    |||||| || |||||||||||||||||||||||    
T  11634369 agccggatttggtgaaccaggataactctcctg 11634337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 48710131 - 48710005
Alignment:
Q  95 caagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgt-ggggactagaagtagccggcttgggtga 193  Q
    ||||||||||||||| | ||||||||||||||| | ||| |||||||| |||||||||||||| ||||||| ||||||| |||||| |||  || |||||    
T  48710131 caagaccttatagtgctagttagaagtttctactagctgaatactatagtggataatctcacacgaagtgtgggggactggaagtatccgagtttggtga 48710032  T
Q  194 accaggataactctcctgtgttattct 220  Q
    ||||| ||| |||||||||||||||||    
T  48710031 accagaatatctctcctgtgttattct 48710005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 7593043 - 7593196
Alignment:
Q  68 aggtgttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtg 164  Q
    |||||||  |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | ||||||||||||||||||||| || |||    
T  7593043 aggtgttacggactgatctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaa--gaaaactataatggataatctcacacgaggtg 7593140  T
Q  165 tggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| ||||||||| | || |||||||||||||||||||| |||||||||||    
T  7593141 tggggactggaagtagccaggtttggtgaaccaggataactctcttgtgttattct 7593196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 15174586 - 15174730
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    ||||||||||||||||||||||| ||| ||||| | || |||||||| |   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  15174586 ggactgatctggtgtgatcaagatcttgtagtgctagtcagaagtttttgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 15174683  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||||||||||| ||||||||||||||||    
T  15174684 gaagtagccgggtttggtgaaccaggataaatctcctgtgttattct 15174730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 19352670 - 19352589
Alignment:
Q  137 actataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttatt 218  Q
    |||||| |||||||||||||| |||||||| ||||| ||||||||||  || |||||||||| ||||||||||||| |||||    
T  19352670 actatagtggataatctcacacgaagtgtgaggactggaagtagccgaatttggtgaaccagtataactctcctgtattatt 19352589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 32817910 - 32817969
Alignment:
Q  10 atcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgagatagg 70  Q
    |||||| ||||| |||||||| ||||||||||||||||| | ||||||||||| |||||||    
T  32817910 atcatcctacaa-agtgtaaactagatctcaagtctattgggcttaatagtttaagatagg 32817969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 9736880 - 9736918
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  9736880 tagatctcaagtctattgggcttaatagtttgagatagg 9736918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 14635031 - 14634993
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  14635031 tagatctcaagtctattgggcttaatagtttgagatagg 14634993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 14644731 - 14644693
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  14644731 tagatctcaagtctattgggcttaatagtttgagatagg 14644693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 14777358 - 14777396
Alignment:
Q  31 ttagatctcaagtctattagacttaatagtttgagatag 69  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  14777358 ttagatctcaagtctattgggcttaatagtttgagatag 14777396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 15229496 - 15229534
Alignment:
Q  31 ttagatctcaagtctattagacttaatagtttgagatag 69  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  15229496 ttagatctcaagtctattgggcttaatagtttgagatag 15229534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 28344140 - 28344178
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  28344140 tagatctcaagtctattgggcttaatagtttgagatagg 28344178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 2155 - 2298
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| |||    
T  2155 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttataccaactgtatactatagtggataatctcacacgaagtgtggggactggaa 2254  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| || |||||||||||||||||||| |||||||||||    
T  2255 gtagccgggtttggtgaaccaggataactctcttgtgttattct 2298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 2043 - 2081
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  2043 tagatctcaagtctatttggcttaatagtttgagatagg 2081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 22066339 - 22066482
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||    
T  22066339 ggactgatctagtgtgatcaagaccttatagtgttggttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggggactggaa 22066438  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  22066439 gtagccgggtttggtgaaccaggataactctcctgtgttattct 22066482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 23884538 - 23884677
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||| |||    
T  23884538 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgcatactatagtggacaatctcacacgaagtgtggggactggaa 23884637  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgtta 216  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  23884638 gtagccgggtttggtgaaccaggataactctcctgtgtta 23884677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 78 - 220
Target Start/End: Complemental strand, 17512363 - 17512221
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||    
T  17512363 gactgatctagtgtgatcaagactttatagtgttggttagaagtttctaccaactgtatactatagtggataatctcacaagaagtgtggggactgaaag 17512264  T
Q  178 tagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||  || ||||||||||||||||||| ||||||||||||    
T  17512263 tagccgagtttggtgaaccaggataactcttctgtgttattct 17512221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 23895758 - 23895614
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  23895758 ggactgatctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 23895661  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  23895660 gaagtagccgggtttggtgaaccaggataactctcctgtgttattct 23895614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 10259920 - 10259779
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    |||||||||||||||||||||||  |||||||| | || ||||||||||   | | | |||||||| |||| |||| |||| |||||||| ||||| |||    
T  10259920 ggactgatctggtgtgatcaagaatttatagtgctagtcagaagtttctcttagcaggatactatagtggagaatcccacacgaagtgtgaggactggaa 10259821  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttatt 218  Q
    ||||| || || |||||||||| |||| ||||||||||||||    
T  10259820 gtagctggatttggtgaaccagaataattctcctgtgttatt 10259779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 11421591 - 11421451
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    |||||||||||||||||||||| ||||||||||| || |||| ||| |   |||   |||||||| |||||||||||||| || ||||||||||| ||||    
T  11421591 gactgatctggtgtgatcaagatcttatagtgttagtcagaattttttgttaacatgatactatagtggataatctcacacgaggtgtggggactggaag 11421492  T
Q  178 tagccggcttgggtgaaccaggataactctcctgtgttatt 218  Q
    ||||||| || | ||||| ||||||| | || |||||||||    
T  11421491 tagccggatttgatgaactaggataattatcttgtgttatt 11421451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 14102414 - 14102497
Alignment:
Q  137 actataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||| ||| | ||||||||||    
T  14102414 actatagtggataatctcacaagaggtgtggggactggaagtagccgggtttggtgaaccaggataattcttcagtgttattct 14102497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 18420658 - 18420741
Alignment:
Q  137 actataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||| || ||||||||||| || |||| |||||| ||||||||||| ||  |||||||||||||||| ||||||||||||||    
T  18420658 actatagtgtataatctcacacgaggtgtcgggactggaagtagccgggttttgtgaaccaggataactatcctgtgttattct 18420741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 23110359 - 23110256
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    |||| ||||||||||||||||| | ||||||| | || ||||||||||   | | | |||||||| |||||||||| ||| |  ||||||||||| ||||    
T  23110359 gacttatctggtgtgatcaagaacatatagtgctagtcagaagtttctgttagccgaatactatagtggataatctaacacggggtgtggggactggaag 23110260  T
Q  178 tagc 181  Q
    ||||    
T  23110259 tagc 23110256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 22066227 - 22066265
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  22066227 tagatctcaagtctattgggcttaatagtttgagatagg 22066265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 23884426 - 23884464
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  23884426 tagatctcaagtctattgggcttaatagtttgagatagg 23884464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 12415008 - 12415045
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatag 69  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  12415008 tagatctcaagtctattgggcttaatagtttgagatag 12415045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 3396969 - 3397108
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  3396969 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactatagtggataatctcacacgaagtgtggggactagaa 3397068  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgtta 216  Q
    ||||| || || ||||||||| ||||||||||||||||||    
T  3397069 gtagctgggtttggtgaaccatgataactctcctgtgtta 3397108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 35877564 - 35877705
Alignment:
Q  79 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagt 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||    
T  35877564 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggggactggaagt 35877663  T
Q  179 agccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||| || |||||||||||||||||||||| |||||||||    
T  35877664 agccgggtttggtgaaccaggataactctcctatgttattct 35877705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 35885053 - 35885194
Alignment:
Q  79 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagt 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||    
T  35885053 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggggactggaagt 35885152  T
Q  179 agccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||| || |||||||||||||||||||||| |||||||||    
T  35885153 agccgggtttggtgaaccaggataactctcctatgttattct 35885194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 36724766 - 36724907
Alignment:
Q  79 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagt 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||    
T  36724766 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggggactggaagt 36724865  T
Q  179 agccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||| || |||||||||||||||||||||| |||||||||    
T  36724866 agccgggtttggtgaaccaggataactctcctatgttattct 36724907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 31710608 - 31710464
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    ||||||||||||||||||||||| ||||||||| | || ||||||||||   | |||  |   |||||| |||||||||||||| || |||||||||||     
T  31710608 ggactgatctggtgtgatcaagatcttatagtgctagtcagaagtttctgttagcaa--gacaactatagtggataatctcacacgaggtgtggggactg 31710511  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||| |||||||||||| |||||||||||    
T  31710510 gaagtagccgggtttggtgaacaaggataactctcatgtgttattct 31710464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 203
Target Start/End: Original strand, 22632446 - 22632571
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||| |  |||||||||| || ||||||||||   | | | |||||||| |||||||||||||| | |||||||||||| ||     
T  22632446 ggactgatctggtgtgatcaacatattatagtgttagtcagaagtttctgatagcaggatactatagtggataatctcacacgtagtgtggggactggac 22632545  T
Q  177 gtagccggcttgggtgaaccaggataa 203  Q
    |||||||| || || ||||||||||||    
T  22632546 gtagccgg-ttaggcgaaccaggataa 22632571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 24022884 - 24022740
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    ||||||||||||||||||||||| ||||||||| | || ||||||||||   | |||  |   |||||| |||||||||||||| || ||||||| | |     
T  24022884 ggactgatctggtgtgatcaagatcttatagtgctagtcagaagtttctgttagcaa--gacaactatagtggataatctcacacgaggtgtgggaattg 24022787  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||| |||||||||||||  |||||||||    
T  24022786 gaagtagccgggtttggtgaacgaggataactctccaatgttattct 24022740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 14273311 - 14273394
Alignment:
Q  137 actataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||| |||||||||||||| || |||||| ||||  |||||||||| || ||||||||||||||| |||| |||||||||||    
T  14273311 actatagtggataatctcacacgaggtgtggagactgaaagtagccgggtttggtgaaccaggataattctcgtgtgttattct 14273394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 203
Target Start/End: Original strand, 1800537 - 1800662
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||| |  |||||||| |  | ||||||||||   | | | |||||||| |||||||||||||| | |||||||||||| ||     
T  1800537 ggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggataatctcacacgtagtgtggggactggac 1800636  T
Q  177 gtagccggcttgggtgaaccaggataa 203  Q
    |||||||| || || ||||||||||||    
T  1800637 gtagccgg-ttaggcgaaccaggataa 1800662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 203
Target Start/End: Original strand, 1791043 - 1791164
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||| |  |||||||| |  | ||||||||||      || |||||||| |||||||||||||| | |||||||||||| ||     
T  1791043 ggactgatctggtgtgatcaacatattatagtgctattcagaagtttctga----tggatactatagtggataatctcacacgtagtgtggggactggac 1791138  T
Q  177 gtagccggcttgggtgaaccaggataa 203  Q
    |||||||| || || ||||||||||||    
T  1791139 gtagccgg-ttaggcgaaccaggataa 1791164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 16446668 - 16446739
Alignment:
Q  135 atactataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactc 206  Q
    |||||||| |||||||||||||| ||| ||||||||||  |||||| ||| ||  |||| ||||||||||||    
T  16446668 atactatagtggataatctcacacgaaatgtggggactgaaagtagtcggatttagtgatccaggataactc 16446739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 1790942 - 1790980
Alignment:
Q  31 ttagatctcaagtctattagacttaatagtttgagatag 69  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  1790942 ttagatctcaagtctattgggcttaatagtttgagatag 1790980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 1800436 - 1800474
Alignment:
Q  31 ttagatctcaagtctattagacttaatagtttgagatag 69  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  1800436 ttagatctcaagtctattgggcttaatagtttgagatag 1800474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 3396857 - 3396895
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  3396857 tagatctcaagtctattgggcttaatagtttgagatagg 3396895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 22632345 - 22632383
Alignment:
Q  31 ttagatctcaagtctattagacttaatagtttgagatag 69  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  22632345 ttagatctcaagtctattgggcttaatagtttgagatag 22632383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 35877450 - 35877488
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  35877450 tagatctcaagtctattgggcttaatagtttgagatagg 35877488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 35884939 - 35884977
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  35884939 tagatctcaagtctattgggcttaatagtttgagatagg 35884977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 36724652 - 36724690
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  36724652 tagatctcaagtctattgggcttaatagtttgagatagg 36724690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 20884590 - 20884447
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||    
T  20884590 ggactgatctggtgtgatcaaaaccttatagtgttggttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggggactggaa 20884491  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| || || |||||||||||||||||||||||||||||    
T  20884490 gtagccgggtttggggaaccaggataactctcctgtgttattct 20884447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 11482361 - 11482504
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  11482361 ggactgatatggtgtgataaagaccttatagtgttggttagaagtttctaccaactgtatactatagtggataatctcacacgaagtgtggggactagaa 11482460  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| || ||  ||||||||||||||||||  ||||||||    
T  11482461 gtagccgggtttggacaaccaggataactctcctacgttattct 11482504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 50516639 - 50516496
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| |||||||||||||| |||||||||||||| |||    
T  50516639 ggactgatctggtgtgatcaagaccttatagtgttggttagaaatttctaccaacggaatactatagtggataatctcacacgaagtgtggggactggaa 50516540  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||| ||| || || |||||||||||||||||||||||||||||    
T  50516539 gtagtcgggtttggggaaccaggataactctcctgtgttattct 50516496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 37059132 - 37059276
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    ||||||||||||||||||||||| ||| ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  37059132 ggactgatctggtgtgatcaagatcttgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 37059229  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  37059230 gaagtagccgggtttggtgaaccaggataactctcctgtgttattct 37059276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 26812545 - 26812698
Alignment:
Q  68 aggtgttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtg 164  Q
    |||||||  |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||    
T  26812545 aggtgttacggactgatctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtg 26812642  T
Q  165 tggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||    
T  26812643 tggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 26812698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 26822012 - 26822165
Alignment:
Q  68 aggtgttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtg 164  Q
    |||||||  |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||    
T  26822012 aggtgttacggactgatctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtg 26822109  T
Q  165 tggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||    
T  26822110 tggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 26822165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 3242429 - 3242285
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  3242429 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 3242332  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  3242331 gaagtagccgggtttggtgaaccaggataactctcctgtgttattct 3242285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 54690055 - 54689911
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  54690055 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 54689958  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  54689957 gaagtagccgggtttggtgaaccaggataactctcctgtgttattct 54689911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 54699486 - 54699342
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  54699486 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 54699389  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  54699388 gaagtagccgggtttggtgaaccaggataactctcctgtgttattct 54699342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 3918173 - 3918256
Alignment:
Q  137 actataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||| |||||||||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||    
T  3918173 actatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 3918256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 15843039 - 15842897
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggactag 174  Q
    |||||||||| ||||||||||| ||||||||| | || ||||||||||   | |||  |   |||||| |||||||||||||| || ||||||||||| |    
T  15843039 gactgatctgatgtgatcaagatcttatagtgctagtcagaagtttctgttagcaa--gacaactatagtggataatctcacacgaggtgtggggactgg 15842942  T
Q  175 aagtagccggcttgggtgaaccaggataactctcctgtgttattc 219  Q
    |||||||||  || ||||||||| |||||||||||||||||||||    
T  15842941 aagtagccgagtttggtgaaccaagataactctcctgtgttattc 15842897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 23622964 - 23623088
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    |||||||||||||||||||| |  |||||||| |  | ||||||||||   | | | |||||||| |||||||||||||| | |||||||||||| || |    
T  23622964 gactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggataatctcacacgtagtgtggggactggacg 23623063  T
Q  178 tagccggcttgggtgaaccaggataa 203  Q
    ||||||| || || ||||||||||||    
T  23623064 tagccgg-ttaggcgaaccaggataa 23623088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 50516771 - 50516712
Alignment:
Q  10 atcatcatacaagagtgtaaattagatctcaagtctattagacttaatagtttgagatagg 70  Q
    |||||| ||||| |||||||| ||||||||||||||||| | |||||||||||||||||||    
T  50516771 atcatcctacaa-agtgtaaaatagatctcaagtctattgggcttaatagtttgagatagg 50516712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 11482249 - 11482287
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  11482249 tagatctcaagtctattcggcttaatagtttgagatagg 11482287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 20884702 - 20884664
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  20884702 tagatctcaagtctattgggcttaatagtttgagatagg 20884664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 23622863 - 23622900
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatag 69  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  23622863 tagatctcaagtctattgggcttaatagtttgagatag 23622900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 28256157 - 28256097
Alignment:
Q  160 aagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||||||||  ||||||||  ||| | ||||||| ||||| ||||||||||||||||    
T  28256157 aagtgtggggactgaaagtagccaactttgatgaaccacgataaatctcctgtgttattct 28256097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 41902616 - 41902536
Alignment:
Q  135 atactataatggataatctcacaagaagtgtggggactagaagtagccggctt-gggtgaaccaggataactctcctgtgt 214  Q
    |||||||| |||||||||||||||| ||  |||||||| |||||| |  |||| | |||||||||||||| |||| |||||    
T  41902616 atactatagtggataatctcacaaggagcctggggactggaagtaacttgcttcgagtgaaccaggataaatctcttgtgt 41902536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 13328419 - 13328278
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||    
T  13328419 ggactgatctggtgtgatcaagacctaatagtgttggttagaagtttctaccaactgtatactatagtggataatctcacacgaagtgtggggactggaa 13328320  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttatt 218  Q
    |||| ||| || ||||||||| ||||||||||||||||||||    
T  13328319 gtagtcgggtttggtgaaccaagataactctcctgtgttatt 13328278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 5385738 - 5385874
Alignment:
Q  79 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagt 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||| |||||||||||||| |||||    
T  5385738 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctatcagctgtatactatagtggataatctcacacgaagtgtggggactggaagt 5385837  T
Q  179 agccggcttgggtgaaccaggataactctcctgtgtt 215  Q
    |||||| || |||||||||||||||||||||||||||    
T  5385838 agccgggtttggtgaaccaggataactctcctgtgtt 5385874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 78 - 220
Target Start/End: Complemental strand, 46305713 - 46305572
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |||||||||||||| ||||    
T  46305713 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactaaagtggataatctca-acgaagtgtggggactggaag 46305615  T
Q  178 tagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||| || | ||||||| ||||||||||||||||||||||    
T  46305614 tagccgggtttgatgaaccaagataactctcctgtgttattct 46305572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 23487088 - 23487232
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggac--taga 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||  | ||    
T  23487088 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgaatactatagtggataatctcacacgaaatgtggggactgtgga 23487187  T
Q  176 agtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||| ||||  | ||||||||||||||||||||||||||||||||    
T  23487188 agtaaccgggattggtgaaccaggataactctcctgtgttattct 23487232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 24794688 - 24794544
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  24794688 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 24794591  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  24794590 gaagtagccgggtttggtgaaccaggataactctcctgtgttattct 24794544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 28367795 - 28367651
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  28367795 ggactgatctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 28367698  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  28367697 gaagtagccgggtttggtgaaccaggataactctcctgtgttattct 28367651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 28375613 - 28375469
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  28375613 ggactgatctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 28375516  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  28375515 gaagtagccgggtttggtgaaccaggataactctcctgtgttattct 28375469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 28383435 - 28383291
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  28383435 ggactgatctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 28383338  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  28383337 gaagtagccgggtttggtgaaccaggataactctcctgtgttattct 28383291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 28351862 - 28351718
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  28351862 ggactgatctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 28351765  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| || |||||||||| |||||||||||||||||||||    
T  28351764 gaagtagccgggtttggtgaaccagcataactctcctgtgttattct 28351718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 38529258 - 38529176
Alignment:
Q  137 actataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattc 219  Q
    |||||| |||||||||||||| || ||||||| ||| ||||||||||| || ||||||| | |||||||||||||| ||||||    
T  38529258 actatagtggataatctcacacgaggtgtgggcactggaagtagccgggtttggtgaactatgataactctcctgtattattc 38529176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 19388868 - 19388936
Alignment:
Q  135 atactataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataa 203  Q
    |||||||| | |||||||||||| |||||||||||||| ||||||||||  || |||||||||||||||    
T  19388868 atactatagtcgataatctcacacgaagtgtggggacttgaagtagccgattttggtgaaccaggataa 19388936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 17530002 - 17529877
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||| |  |||||||| |  | ||||||||||   | | | |||||||| |||||||||||||| | |||||||||||| ||     
T  17530002 ggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggataatctcacacgtagtgtggggactggac 17529903  T
Q  177 gtagccggcttgggtgaaccaggataa 203  Q
    |||||||| || || ||||||||||||    
T  17529902 gtagccgg-ttaggcgaaccaggataa 17529877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 4951702 - 4951783
Alignment:
Q  139 tataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||| |||||||||||||| || ||||| ||||| ||||||| ||  || ||||||||| |||||||||| |||||||||||    
T  4951702 tatagtggataatctcacacgaggtgtgaggacttgaagtagtcgagtttggtgaaccaagataactctcatgtgttattct 4951783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 7784148 - 7784101
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttct 125  Q
    |||||||||||||||||||||||||||||||||| || | ||||||||    
T  7784148 gactgatctggtgtgatcaagaccttatagtgttagtcataagtttct 7784101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 32877915 - 32878039
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    |||||||||||||||||||| |  ||||||||||  | |||||||| |   | |   |||||||| |||||||||||||| | |||||||||||| || |    
T  32877915 gactgatctggtgtgatcaacaaattatagtgttattcagaagtttatgatagcatgatactatagtggataatctcacacgtagtgtggggactggacg 32878014  T
Q  178 tagccggcttgggtgaaccaggataa 203  Q
    ||||||| || || ||||||||||||    
T  32878015 tagccgg-ttaggcgaaccaggataa 32878039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 203
Target Start/End: Original strand, 48978714 - 48978835
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||| |  |||||||| |  | ||||||||||      || |||||||| |||||||||||||| | |||||||||||| ||     
T  48978714 ggactgatctggtgtgatcaacatattatagtgctattcagaagtttctga----tggatactatagtggataatctcacacgtagtgtggggactggac 48978809  T
Q  177 gtagccggcttgggtgaaccaggataa 203  Q
    |||||||| || || ||||||||||||    
T  48978810 gtagccgg-ttaggcgaaccaggataa 48978835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 203
Target Start/End: Original strand, 48988254 - 48988375
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||| |  |||||||| |  | ||||||||||      || |||||||| |||||||||||||| | |||||||||||| ||     
T  48988254 ggactgatctggtgtgatcaacatattatagtgctattcagaagtttctga----tggatactatagtggataatctcacacgtagtgtggggactggac 48988349  T
Q  177 gtagccggcttgggtgaaccaggataa 203  Q
    |||||||| || || ||||||||||||    
T  48988350 gtagccgg-ttaggcgaaccaggataa 48988375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 54624700 - 54624824
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    |||||||||||| ||||||| |  |||||||| |  | ||||||||||   | | | |||||||| |||||||||||||| | |||||||||||| || |    
T  54624700 gactgatctggtatgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggataatctcacacgtagtgtggggactggacg 54624799  T
Q  178 tagccggcttgggtgaaccaggataa 203  Q
    ||||||| || || ||||||||||||    
T  54624800 tagccgg-ttaggcgaaccaggataa 54624824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 5385624 - 5385662
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  5385624 tagatctcaagtctattgggcttaatagtttgagatagg 5385662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 17530103 - 17530065
Alignment:
Q  31 ttagatctcaagtctattagacttaatagtttgagatag 69  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  17530103 ttagatctcaagtctattgggcttaatagtttgagatag 17530065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 17535042 - 17535004
Alignment:
Q  31 ttagatctcaagtctattagacttaatagtttgagatag 69  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  17535042 ttagatctcaagtctattgggcttaatagtttgagatag 17535004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 23486975 - 23487013
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  23486975 tagatctcaagtctattgggcttaatagtttgagatagg 23487013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 46305826 - 46305788
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  46305826 tagatctcaagtctattgggcttaatagtttgagatagg 46305788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 48978613 - 48978651
Alignment:
Q  31 ttagatctcaagtctattagacttaatagtttgagatag 69  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  48978613 ttagatctcaagtctattgggcttaatagtttgagatag 48978651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 48988153 - 48988191
Alignment:
Q  31 ttagatctcaagtctattagacttaatagtttgagatag 69  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  48988153 ttagatctcaagtctattgggcttaatagtttgagatag 48988191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 19388695 - 19388740
Alignment:
Q  23 agtgtaaattagatctcaagtctattagacttaatagtttgagata 68  Q
    ||||||| ||||||||||||||||||||  ||| ||||||||||||    
T  19388695 agtgtaacttagatctcaagtctattaggattagtagtttgagata 19388740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 54624599 - 54624636
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatag 69  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  54624599 tagatctcaagtctattgggcttaatagtttgagatag 54624636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 124093 - 124236
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||    
T  124093 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgcatactatagtggataatctcacacgaagtgtggggactggaa 124192  T
Q  177 gtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||| | || || | ||||||||||||||||||||||||||||||    
T  124193 gtaacaggatttgatgaaccaggataactctcctgtgttattct 124236  T

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Target: scaffold0021; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 100028 - 100152
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    ||||||| |||||||||||| |  |||||||| |  | ||||||||||   | | | ||||||||||||||||||||||| | |||||||||||| ||      
T  100028 gactgatttggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactataatggataatctcacacgtagtgtggggactggaca 100127  T
Q  178 tagccggcttgggtgaaccaggataa 203  Q
    ||||||| || || ||||||||||||    
T  100128 tagccgg-ttaggcgaaccaggataa 100152  T

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Target: scaffold0021; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 143103 - 143141
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatagg 70  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  143103 tagatctcaagtctattgggcttaatagtttgagatagg 143141  T

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Target: scaffold0021; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 99927 - 99964
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatag 69  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  99927 tagatctcaagtctattgggcttaatagtttgagatag 99964  T

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Target: scaffold0021; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 180850 - 180887
Alignment:
Q  32 tagatctcaagtctattagacttaatagtttgagatag 69  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  180850 tagatctcaagtctattgggcttaatagtttgagatag 180887  T

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Target: scaffold0010 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 257006 - 257142
Alignment:
Q  79 actgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaagt 178  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||| |||||    
T  257006 actgatctggtgtgatcaagactttatagtgttggttagaagtttctaccaactgaatactatagtggataatttcacacgaagtgtggggactggaagt 257105  T
Q  179 agccggcttgggtgaaccaggataactctcctgtgtt 215  Q
    |||||| || |||||||||||||||||||||||||||    
T  257106 agccggatttggtgaaccaggataactctcctgtgtt 257142  T

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Target: scaffold0040 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 220
Target Start/End: Complemental strand, 30964 - 30821
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggactag 174  Q
    |||||||||||||||||||| |  || ||||||| || ||||||||||   | |||  | | |||||| |||||||||||||| || ||||||||||| |    
T  30964 gactgatctggtgtgatcaaaatattgtagtgttagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactgg 30867  T
Q  175 aagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||||||| || ||||||||||||||||||||||||||||||||    
T  30866 aagtagccgggtttggtgaaccaggataactctcctgtgttattct 30821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 10089 - 10230
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggactag 174  Q
    |||||||||||||||||| ||||||||||||| | || ||||||||||   | |||  |   |||||| |||||||||||||| |  ||||||||||| |    
T  10089 gactgatctggtgtgatctagaccttatagtgctagtcagaagtttctgttagcaa--gacaactatagtggataatctcacacggggtgtggggactgg 10186  T
Q  175 aagtagccggcttgggtgaaccaggataactctcctgtgttattc 219  Q
    || ||||||  || ||||||||| |||||||||| ||||||||||    
T  10187 aa-tagccgtgtttggtgaaccaagataactctcatgtgttattc 10230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 94573 - 94429
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  94573 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 94476  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||||||||||| ||  |||||||||||||||||||||||||||||||    
T  94475 gaagtagccgggtttagtgaaccaggataactctcctgtgttattct 94429  T

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Target: scaffold0028; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 104014 - 103870
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactataatggataatctcacaagaagtgtggggacta 173  Q
    |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||| |||||||||||||| || |||||||||||     
T  104014 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactg 103917  T
Q  174 gaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    ||| ||||||| || ||||||||||||||||||||||||||||||||    
T  103916 gaattagccgggtttggtgaaccaggataactctcctgtgttattct 103870  T

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Target: scaffold0001 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 408435 - 408518
Alignment:
Q  137 actataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||| |||||||||||||| || ||||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||||    
T  408435 actatagtggataatctcacacgaggtgtggggactggaagtagacgggtttggtgaaccaggataactctcctgtgttattct 408518  T

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Target: scaffold0482 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 3640 - 3723
Alignment:
Q  137 actataatggataatctcacaagaagtgtggggactagaagtagccggcttgggtgaaccaggataactctcctgtgttattct 220  Q
    |||||| |||||||||||||| || ||||||||||| ||||||||||| || |||||||||| |||| ||||||||||||||||    
T  3640 actatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccagaataattctcctgtgttattct 3723  T

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Target: scaffold0269 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 14954 - 14830
Alignment:
Q  78 gactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaag 177  Q
    |||||||||||||||||||| |  |||||||| |  | ||||||||||   | | | |||||||| |||||||||||||| | |||||||||||| || |    
T  14954 gactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggataatctcacacgtagtgtggggactggacg 14855  T
Q  178 tagccggcttgggtgaaccaggataa 203  Q
    ||||||| || || ||||||||||||    
T  14854 tagccgg-ttaggcgaaccaggataa 14830  T

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Target: scaffold0247 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 203
Target Start/End: Original strand, 24637 - 24762
Alignment:
Q  77 ggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactataatggataatctcacaagaagtgtggggactagaa 176  Q
    ||||||||||||||||||||| |  |||||||| |  | ||||||||||   | | | |||||||| |||||||||||||| | |||||||||||| ||     
T  24637 ggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggataatctcacacgtagtgtggggactggac 24736  T
Q  177 gtagccggcttgggtgaaccaggataa 203  Q
    ||||| || || || ||||||||||||    
T  24737 gtagctgg-ttaggcgaaccaggataa 24762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 27194 - 27078
Alignment:
Q  81 tgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaactgtatactata----atggataatctcacaagaagtgtggggactagaa 176  Q
    |||||| |||||||||||| | |||||||||  | ||||||||||   |  || ||||||||    ||||||||||||||| ||||| |||||||| |||    
T  27194 tgatctagtgtgatcaagaacatatagtgttattaagaagtttctgatagttggatactatagtggatggataatctcacacgaagtatggggactggaa 27095  T
Q  177 gtagccggcttgggtga 193  Q
    ||||||| ||| |||||    
T  27094 gtagccgactttggtga 27078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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