View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3748_low_1 (Length: 511)
Name: NF3748_low_1
Description: NF3748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3748_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Complemental strand, 2125229 - 2124737
Alignment:
| Q |
18 |
agaatgcttcgtagcttttcttcctacttcaatgatgttatctctaaaattgattcaccattttacccaagtgactttaggtcttactacatacatatta |
117 |
Q |
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| T |
2125229 |
agaatgcttcgtagcttttcttcctacttcaatgattttatctctaaaattgattcaccattttacccaggtgactttaggtcttactacatacatatta |
2125130 |
T |
|
| Q |
118 |
ggctatctatatatataatgttggcggtgaaggtgtta--gtggcttggtttgctaaggttacgtgcaatcttatctcaccgaatcaatgtgtttttgtc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2125129 |
ggctatctatatatataatgttggcggtgaaggtgttatagtggcttggtttgctaagtttacgtgcaatcttatctcaccgaatcaatgtgtttttgtc |
2125030 |
T |
|
| Q |
216 |
gaaggtgttactgatattaatgatttcgctaaacaagtcttagagactgactatgccttatttttaaggtcaattttgacagttgggtaggtgatgagat |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2125029 |
gaaggtgttactcatattaatgatttcgctaaacaagtcttagagactgactatgccttatttttaaggtcaattttgacagttgggtaggtgatgagat |
2124930 |
T |
|
| Q |
316 |
attcgttgtgataggttatttttggtctatgatcaacaaactgtgttggttcccagtgtgggccattggcctgaggatata--atatatggggttgggat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2124929 |
attcgttgtgataggttatttttggtctatgatcaacaaactgtgttggttgccagtgtgggccattggcctgaggatatatcatatatggggttgggat |
2124830 |
T |
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| Q |
414 |
ctaactttgaggaagtagctccttgtttggaagcttcaattagttgaggatgatctaagtggtttgtactctatagggttaacctatgcttct |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2124829 |
ctaactttgaggaagtagctccttgtttggaagcttcaattaattgaggatgatctaagtggtttgtactctatagggttaacctatgtttct |
2124737 |
T |
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