View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3748_low_2 (Length: 412)
Name: NF3748_low_2
Description: NF3748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3748_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 27 - 412
Target Start/End: Original strand, 35289997 - 35290378
Alignment:
| Q |
27 |
ttgtgacttgtgagcaagacttgcctctatggttatgctaactagaatgattatgttaatatctttttaattaatgatttaattgtttgtttttggtttc |
126 |
Q |
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| T |
35289997 |
ttgtgacttgtgagcaagacttgcctctatggttatgctaactagaatgattatgttaatatctttttaatttatgatttaattgtttgtttttggtttc |
35290096 |
T |
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| Q |
127 |
caggacgaccacctatggaagaaatattagaagctcgaagaaagaaggtattcatattcaactgcataaaagtatcatgttagcatataatgtttctgca |
226 |
Q |
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| T |
35290097 |
caggacgaccacctatggaagaaatattagaagctcgaagaaagaaggtattcatattcaactgcat-aaagtatcatgttagtatataatgtttctgca |
35290195 |
T |
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| Q |
227 |
gaataaaatcaggaaaatgaagatggcaatgaaaatttaacacaaaaaagaatttcagtcggagaaccatctgaatttttaaagagaatgattgtttaac |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35290196 |
gaataaaatcaggaaaatgaagatggcaatgaaaatttaacac---aaagaatttcagtcggagaaccatctgaatttttaaagagaatgattgtttaac |
35290292 |
T |
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| Q |
327 |
ctcatatacattagaataattgagattgaaattatgccccattgcttagattagtctatccctgttaatttaggtatagttgacct |
412 |
Q |
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| T |
35290293 |
ctcatatacagtagaataattgagattgaaattatgccccattgcttagattagtctatccctgttaatttaggtatagttgacct |
35290378 |
T |
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