View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3748_low_3 (Length: 402)
Name: NF3748_low_3
Description: NF3748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3748_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 32494531 - 32494899
Alignment:
| Q |
18 |
atatccaacccttaaccggatctgctggaatcataagaagtatatgcagtgctatcaattgattttgcaaaattttttcttcatcagaatgcatcattcg |
117 |
Q |
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| T |
32494531 |
atatccaacccttaaccggatctgctggaatcataagaagtatatgcagtgctatcaattgattttgcaaatttttttcttcatcagaatgcatcattcg |
32494630 |
T |
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| Q |
118 |
tttgccaattgctattgatggtgccatgtagtctctttcatcattaaattgcaaattctttaatacattttcgttcctgtttctacaattgtacgatgtt |
217 |
Q |
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| T |
32494631 |
tttgccaattgctattgatggtgccatgtagtctctttcatcattaaattgcaaattctttaatacattttcgttcctgtttctacaattgtacggtgtt |
32494730 |
T |
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| Q |
218 |
tatagaattatttactatcaattcattttattgtatttgtggtgatctatgtagctatttcatagtgatcaataaattgtaaattgaacattccatcttg |
317 |
Q |
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| T |
32494731 |
tatagaattatttactatcaattcattttattgtatttgtggtgatctatgtagctatttcatagtgatcaataaattgtaaattgaacattccatcttg |
32494830 |
T |
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| Q |
318 |
agctcgaagtcatgaaattgcttgcgtgtttatattttttatggtgaatatattcttcttactctcttc |
386 |
Q |
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| T |
32494831 |
aactcgaagtcatgaaattgcttgcgtgtttatattttttatggtgaatatattcttcttactctcttc |
32494899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 28596311 - 28596580
Alignment:
| Q |
18 |
atatccaacccttaaccggatctgctggaatcataagaagtatatgcagtgctatcaattgattttgcaaaattttttcttcatcagaatgcatcattcg |
117 |
Q |
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| T |
28596311 |
atatccaacccttaaccggatctgctggaatcataagaagtatatgcagtgctatcaattaattttacaaaattctttcttcatcagcatgcatcatttg |
28596410 |
T |
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| Q |
118 |
tttgccaattgctattgatggtgccatgtagtctctttcatcattaaattgcaaattctttaatacattttcgttcctgtttctacaattgtacgatgtt |
217 |
Q |
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| T |
28596411 |
tttgccaattgctattaatggtgtctgttagtctctttcatcattaaatt---aattcttttatacatttgcgttcctttttctacaattgtacggtgtt |
28596507 |
T |
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| Q |
218 |
tatagaattatttactatcaattcattttattgtatttgtggtgatctatgtagctatttcatagtgatcaataaattgtaa |
299 |
Q |
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| T |
28596508 |
tatataaagatttattatcaattcattttattgtatatgtg---------ttagctatttcatagtgatcaataaattgtaa |
28596580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 28596639 - 28596685
Alignment:
| Q |
297 |
taaattgaacattccatcttgagctcgaagtcatgaaattgcttgcg |
343 |
Q |
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| T |
28596639 |
taaattgaacattccatcttgagtacgaagtcatgaaattgcttgcg |
28596685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 28586571 - 28586526
Alignment:
| Q |
24 |
aacccttaaccggatctgctggaatcataagaagtatatgcagtgc |
69 |
Q |
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| T |
28586571 |
aacccttaaccggatcggctggagtcataagaagcatatgcagtgc |
28586526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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