View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3748_low_5 (Length: 277)

Name: NF3748_low_5
Description: NF3748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3748_low_5
NF3748_low_5
[»] chr8 (14 HSPs)
chr8 (18-217)||(8002515-8002714)
chr8 (243-276)||(3456825-3456858)
chr8 (239-277)||(7968940-7968978)
chr8 (233-274)||(28580970-28581012)
chr8 (233-277)||(4830031-4830076)
chr8 (233-277)||(21557456-21557501)
chr8 (233-277)||(27571842-27571887)
chr8 (233-277)||(44632178-44632223)
chr8 (234-277)||(7147206-7147250)
chr8 (233-277)||(7987723-7987767)
chr8 (233-277)||(8837943-8837987)
chr8 (233-276)||(18422446-18422490)
chr8 (249-277)||(32115416-32115444)
chr8 (233-277)||(37570747-37570791)
[»] chr6 (7 HSPs)
chr6 (233-277)||(32409172-32409216)
chr6 (238-277)||(25023649-25023688)
chr6 (233-277)||(24623310-24623355)
chr6 (233-276)||(15169955-15169999)
chr6 (233-276)||(15178727-15178771)
chr6 (233-277)||(788889-788934)
chr6 (233-277)||(11456369-11456413)
[»] chr5 (7 HSPs)
chr5 (239-277)||(43135193-43135231)
chr5 (233-277)||(29695038-29695083)
chr5 (233-277)||(20125049-20125093)
chr5 (233-277)||(19647501-19647546)
chr5 (243-271)||(21052998-21053026)
chr5 (233-277)||(39914924-39914968)
chr5 (249-277)||(39963516-39963544)
[»] chr7 (12 HSPs)
chr7 (233-277)||(7388032-7388077)
chr7 (243-277)||(3953464-3953498)
chr7 (233-277)||(27833394-27833439)
chr7 (233-277)||(37325977-37326022)
chr7 (233-277)||(42227798-42227843)
chr7 (233-274)||(44717389-44717430)
chr7 (233-277)||(44868148-44868193)
chr7 (233-276)||(3536247-3536291)
chr7 (233-277)||(21136854-21136898)
chr7 (233-277)||(35001124-35001168)
chr7 (249-277)||(36755037-36755065)
chr7 (249-277)||(36760834-36760862)
[»] chr4 (11 HSPs)
chr4 (233-277)||(21649301-21649346)
chr4 (233-277)||(48159700-48159745)
chr4 (233-277)||(17656787-17656831)
chr4 (233-276)||(17948129-17948173)
chr4 (233-276)||(22164262-22164306)
chr4 (249-277)||(22411787-22411815)
chr4 (249-277)||(36071167-36071195)
chr4 (237-276)||(37005516-37005556)
chr4 (233-277)||(37462134-37462178)
chr4 (233-276)||(50380829-50380873)
chr4 (238-277)||(50650925-50650965)
[»] chr1 (11 HSPs)
chr1 (233-277)||(13401620-13401665)
chr1 (233-277)||(6219856-6219900)
chr1 (234-277)||(41926845-41926888)
chr1 (234-276)||(3573319-3573361)
chr1 (243-277)||(30548095-30548129)
chr1 (233-277)||(17917131-17917176)
chr1 (243-276)||(27023659-27023692)
chr1 (233-277)||(27533266-27533311)
chr1 (233-277)||(43356458-43356503)
chr1 (249-277)||(28257736-28257764)
chr1 (233-269)||(42267231-42267267)
[»] chr3 (12 HSPs)
chr3 (233-277)||(5534695-5534739)
chr3 (233-276)||(45334213-45334257)
chr3 (233-276)||(23332674-23332717)
chr3 (238-277)||(42269321-42269360)
chr3 (233-277)||(7464484-7464529)
chr3 (233-277)||(16980347-16980392)
chr3 (233-277)||(24521671-24521716)
chr3 (233-277)||(25727960-25728005)
chr3 (233-276)||(17755145-17755189)
chr3 (233-276)||(19056465-19056509)
chr3 (249-277)||(22843487-22843515)
chr3 (234-274)||(49223021-49223061)
[»] chr2 (10 HSPs)
chr2 (233-277)||(3197073-3197117)
chr2 (236-277)||(10991565-10991606)
chr2 (241-274)||(41682389-41682422)
chr2 (233-276)||(3196584-3196628)
chr2 (249-277)||(4238782-4238810)
chr2 (238-277)||(20120719-20120759)
chr2 (233-277)||(22267536-22267580)
chr2 (233-276)||(24581010-24581054)
chr2 (233-276)||(25395435-25395479)
chr2 (249-277)||(41542993-41543021)
[»] scaffold0011 (1 HSPs)
scaffold0011 (249-277)||(189982-190010)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 8002515 - 8002714
Alignment:
Q  18 aagttaattatggtcaagaattatttatatcggaagtcaatcgtcgttattctgaacgattcttttaggagaagctcattatccacttggactcaatcac 117  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8002515 aagttaattatggtcaagaattatttatatcggaagtcaatcttggttattttgaacgattcttttaggagaagctcattatccacttgaactcaatcac 8002614  T
Q  118 ttgatcttgtcgtaatgacttaactaaaactagactcaatcacttgtacttgtcataatgacttaaccaaaactagatttcctaattattattactagtc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8002615 ttgatcttgtcgtaatgacttaactaaaactagactcaatcacttgtacttgtcataatgacttaaccaaaactagatttcctaattattattattagtc 8002714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 276
Target Start/End: Original strand, 3456825 - 3456858
Alignment:
Q  243 tttgaacccgaaccttacatatattatgcattgt 276  Q
    ||||||||||||||||||||||||||||||||||    
T  3456825 tttgaacccgaaccttacatatattatgcattgt 3456858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 7968940 - 7968978
Alignment:
Q  239 gggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  7968940 gggatttgaacccggaccttgcatatattatgcattgtc 7968978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 28581012 - 28580970
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcatt 274  Q
    ||||||||||||||||||| ||||||||||||| |||||||||    
T  28581012 gtggtcgggatttgaaccccgaaccttacatattttatgcatt 28580970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 4830076 - 4830031
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 277  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||||    
T  4830076 gtggtcgggattcgaaccccgaaccttgcatatattatgcattgtc 4830031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 21557501 - 21557456
Alignment:
Q  233 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtc 277  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||    
T  21557501 gtggtcgggattcgaacctcggaccttacatatattatgcattgtc 21557456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 27571842 - 27571887
Alignment:
Q  233 gtggtcgggatttgaacccgaa-ccttacatatattatgcattgtc 277  Q
    ||||||||||||||||||| || |||| ||||||||||||||||||    
T  27571842 gtggtcgggatttgaaccccaaaccttgcatatattatgcattgtc 27571887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 44632178 - 44632223
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 277  Q
    ||||||||| ||||||||| |||||||| |||||||||||||||||    
T  44632178 gtggtcggggtttgaaccccgaaccttatatatattatgcattgtc 44632223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 7147206 - 7147250
Alignment:
Q  234 tggtcgggatttgaacc-cgaaccttacatatattatgcattgtc 277  Q
    |||||||| |||||||| ||||||||||||||||||| |||||||    
T  7147206 tggtcggggtttgaaccacgaaccttacatatattatacattgtc 7147250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 7987723 - 7987767
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    |||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  7987723 gtggtcggaatttgaacccggaccttgcatatattatgtattgtc 7987767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 8837987 - 8837943
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    |||||||| ||||||||||| |||||  |||||||||||||||||    
T  8837987 gtggtcggaatttgaacccggaccttgtatatattatgcattgtc 8837943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 18422446 - 18422490
Alignment:
Q  233 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgt 276  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||    
T  18422446 gtggttggggtttgaatcccgaaccttacatatattatgcattgt 18422490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 32115416 - 32115444
Alignment:
Q  249 cccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||||||||||||||||    
T  32115416 cccgaaccttacatatattatgcattgtc 32115444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 37570747 - 37570791
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    ||||||||| ||||||||| |||||||||||| ||||| ||||||    
T  37570747 gtggtcggggtttgaaccccaaccttacatatgttatgtattgtc 37570791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 32409172 - 32409216
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    ||||||| | |||||||||||||||||||||||||||||||||||    
T  32409172 gtggtcgaggtttgaacccgaaccttacatatattatgcattgtc 32409216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 25023688 - 25023649
Alignment:
Q  238 cgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  25023688 cgggatttgaacccgaactttacatatattatgcattgtc 25023649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 24623310 - 24623355
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 277  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  24623310 gtggtcggggtttgaaccccgaaccttacatatattatgcattgtc 24623355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 15169999 - 15169955
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 276  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  15169999 gtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15169955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 15178771 - 15178727
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 276  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  15178771 gtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15178727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 788934 - 788889
Alignment:
Q  233 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtc 277  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  788934 gtggtcggggtttgaactccgaaccttgcatatattatgcattgtc 788889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 11456369 - 11456413
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    |||| |||| |||||||||  ||||||||||||||||||||||||    
T  11456369 gtggccggggtttgaaccccgaccttacatatattatgcattgtc 11456413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 43135193 - 43135231
Alignment:
Q  239 gggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  43135193 gggatttgaacccggaccttacatatattatgcattgtc 43135231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 29695083 - 29695038
Alignment:
Q  233 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtc 277  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||    
T  29695083 gtggtcggggtttgaaccacgaaccttacatatattatgcattgtc 29695038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 20125093 - 20125049
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    ||||||||  |||||||||||||||| ||||||||||||||||||    
T  20125093 gtggtcggagtttgaacccgaaccttgcatatattatgcattgtc 20125049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 19647501 - 19647546
Alignment:
Q  233 gtggtcgggatttgaacccga-accttacatatattatgcattgtc 277  Q
    ||||||||||||||||||| | |||||||||||||||| |||||||    
T  19647501 gtggtcgggatttgaaccccagaccttacatatattatacattgtc 19647546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 21053026 - 21052998
Alignment:
Q  243 tttgaacccgaaccttacatatattatgc 271  Q
    |||||||||||||||||||||||||||||    
T  21053026 tttgaacccgaaccttacatatattatgc 21052998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 39914968 - 39914924
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    ||||||||| || ||||||| ||||| ||||||||||||||||||    
T  39914968 gtggtcggggttcgaacccggaccttgcatatattatgcattgtc 39914924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 39963544 - 39963516
Alignment:
Q  249 cccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||||||||||||||||    
T  39963544 cccgaaccttacatatattatgcattgtc 39963516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 7388032 - 7388077
Alignment:
Q  233 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtc 277  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  7388032 gtggtcggggtttgaatcccgaaccttacatatattatgcattgtc 7388077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 3953498 - 3953464
Alignment:
Q  243 tttgaacccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||| ||||||||||||||||||    
T  3953498 tttgaacccgaaccttgcatatattatgcattgtc 3953464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 27833394 - 27833439
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 277  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||    
T  27833394 gtggtcggggtttgaaccccggaccttacatatattatgcattgtc 27833439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 37325977 - 37326022
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatatt-atgcattgtc 277  Q
    |||| |||| ||||||||||||||||||||||||| ||||||||||    
T  37325977 gtggccggggtttgaacccgaaccttacatatattaatgcattgtc 37326022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 42227798 - 42227843
Alignment:
Q  233 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtc 277  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||    
T  42227798 gtggtcggagtttgaacctcgaaccttacatatattatgcattgtc 42227843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 44717430 - 44717389
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcatt 274  Q
    ||||||||||||||||| |||| |||||||||||||| ||||    
T  44717430 gtggtcgggatttgaactcgaatcttacatatattatacatt 44717389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 44868148 - 44868193
Alignment:
Q  233 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtc 277  Q
    |||||||| ||||||||| || ||||||||||||||||||||||||    
T  44868148 gtggtcggaatttgaacctcggaccttacatatattatgcattgtc 44868193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 3536247 - 3536291
Alignment:
Q  233 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgt 276  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||    
T  3536247 gtggtcggagtttgaatcccgaaccttacatatattatgcattgt 3536291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 21136898 - 21136854
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    ||||||||||||||||||  |||||| |||||||||| |||||||    
T  21136898 gtggtcgggatttgaacctcaaccttgcatatattatacattgtc 21136854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 35001124 - 35001168
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    ||||||||| ||||||| | ||||||| |||||||||||||||||    
T  35001124 gtggtcggggtttgaactcaaaccttaaatatattatgcattgtc 35001168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 36755065 - 36755037
Alignment:
Q  249 cccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||||||||||||||||    
T  36755065 cccgaaccttacatatattatgcattgtc 36755037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 36760862 - 36760834
Alignment:
Q  249 cccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||||||||||||||||    
T  36760862 cccgaaccttacatatattatgcattgtc 36760834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 21649346 - 21649301
Alignment:
Q  233 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||    
T  21649346 gtggtcgggatttgaagcccgatccttacatatattatgcattgtc 21649301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 48159745 - 48159700
Alignment:
Q  233 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  48159745 gtggtcgggatttgaacttcgaaccttacatatattatgcattgtc 48159700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 17656787 - 17656831
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||||    
T  17656787 gtggccgggattcgaacctgaaccttacatatattatgcattgtc 17656831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 17948129 - 17948173
Alignment:
Q  233 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgt 276  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||||    
T  17948129 gtggtcggggtttgaactccgaaccttacatattttatgcattgt 17948173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 22164262 - 22164306
Alignment:
Q  233 gtggtcgggatttgaacccga-accttacatatattatgcattgt 276  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||    
T  22164262 gtggtcggggtttgaaccccagaccttacatatattatgcattgt 22164306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 22411815 - 22411787
Alignment:
Q  249 cccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||||||||||||||||    
T  22411815 cccgaaccttacatatattatgcattgtc 22411787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 36071195 - 36071167
Alignment:
Q  249 cccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||||||||||||||||    
T  36071195 cccgaaccttacatatattatgcattgtc 36071167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 37005516 - 37005556
Alignment:
Q  237 tcgggatttgaaccc-gaaccttacatatattatgcattgt 276  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  37005516 tcgggattcgaaccctgaaccttacatatattatgcattgt 37005556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 37462178 - 37462134
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    ||||||||| || ||| ||| ||||||||||||||||||||||||    
T  37462178 gtggtcggggttggaatccggaccttacatatattatgcattgtc 37462134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 50380829 - 50380873
Alignment:
Q  233 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgt 276  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||    
T  50380829 gtggtcgagatttgaactccggaccttacatatattatgcattgt 50380873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 277
Target Start/End: Original strand, 50650925 - 50650965
Alignment:
Q  238 cgggatttgaaccc-gaaccttacatatattatgcattgtc 277  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  50650925 cgggattcgaaccctgaaccttacatatattatgcattgtc 50650965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 13401665 - 13401620
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 277  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  13401665 gtggtcggggtttgaaccccgaaccttacatatattatgcattgtc 13401620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 6219856 - 6219900
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||    
T  6219856 gtggtcaggatttgaacccggaccttacatatattatgtattgtc 6219900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 277
Target Start/End: Complemental strand, 41926888 - 41926845
Alignment:
Q  234 tggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||||    
T  41926888 tggtcggaattcgaacccggaccttacatatattatgcattgtc 41926845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 3573319 - 3573361
Alignment:
Q  234 tggtcgggatttgaacccgaaccttacatatattatgcattgt 276  Q
    |||||||||||| ||| | ||||||||||||||||||||||||    
T  3573319 tggtcgggatttaaactcaaaccttacatatattatgcattgt 3573361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 30548095 - 30548129
Alignment:
Q  243 tttgaacccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||| ||||||||||||||||||    
T  30548095 tttgaacccgaaccttgcatatattatgcattgtc 30548129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 17917131 - 17917176
Alignment:
Q  233 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtc 277  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||||    
T  17917131 gtggtcggggtttgaatcccgaaccttacatattttatgcattgtc 17917176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 243 - 276
Target Start/End: Original strand, 27023659 - 27023692
Alignment:
Q  243 tttgaacccgaaccttacatatattatgcattgt 276  Q
    |||||||||||||||| |||||||||||||||||    
T  27023659 tttgaacccgaaccttgcatatattatgcattgt 27023692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 27533311 - 27533266
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 277  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  27533311 gtggtcggggtttgaaccccgaaccttgcatatattatgcattgtc 27533266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 43356503 - 43356458
Alignment:
Q  233 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtc 277  Q
    ||||||||| ||||||| || |||||||||||||||||||||||||    
T  43356503 gtggtcggggtttgaactccaaaccttacatatattatgcattgtc 43356458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 28257764 - 28257736
Alignment:
Q  249 cccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||||||||||||||||    
T  28257764 cccgaaccttacatatattatgcattgtc 28257736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 42267267 - 42267231
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattat 269  Q
    |||||||||||||||||| | ||||||||||||||||    
T  42267267 gtggtcgggatttgaacctggaccttacatatattat 42267231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 5534695 - 5534739
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||    
T  5534695 gtggtcgggatttgaacccgaaccttgcatattttacgcattgtc 5534739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 45334257 - 45334213
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 276  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||    
T  45334257 gtggtcgggatttgaaccccgaaccttgcatatattatgcattgt 45334213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 23332717 - 23332674
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgt 276  Q
    ||||||||| |||||||| ||||| |||||||||||||||||||    
T  23332717 gtggtcggggtttgaaccagaaccatacatatattatgcattgt 23332674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 42269360 - 42269321
Alignment:
Q  238 cgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  42269360 cggggtttgaactcgaaccttacatatattatgcattgtc 42269321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 7464484 - 7464529
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 277  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||    
T  7464484 gtggtcggggtttgaaccccggaccttacatatattatgcattgtc 7464529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 16980347 - 16980392
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 277  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||    
T  16980347 gtggtcgggatttgaaccatgaaccttgcatatattatgcattgtc 16980392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 24521716 - 24521671
Alignment:
Q  233 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtc 277  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  24521716 gtggtcgagatttgaactccgaaccttacatattttatgcattgtc 24521671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 25727960 - 25728005
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 277  Q
    ||||||||||||||||||| | ||||| ||||||||||||||||||    
T  25727960 gtggtcgggatttgaaccccggaccttgcatatattatgcattgtc 25728005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 17755189 - 17755145
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 276  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||    
T  17755189 gtggtcggaatttgaaccccgaaccttacatatattatgtattgt 17755145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 19056509 - 19056465
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 276  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||    
T  19056509 gtggtcggaatttgaaccccgaaccttacatatattatgtattgt 19056465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 22843515 - 22843487
Alignment:
Q  249 cccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||||||||||||||||    
T  22843515 cccgaaccttacatatattatgcattgtc 22843487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 49223021 - 49223061
Alignment:
Q  234 tggtcgggatttgaacccgaaccttacatatattatgcatt 274  Q
    ||||||||||| |||||| |||||| |||||||||||||||    
T  49223021 tggtcgggattcgaaccccaaccttgcatatattatgcatt 49223061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 3197073 - 3197117
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||    
T  3197073 gtggtcggggtttgaatccgaaccttgcatatattatgcattgtc 3197117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 10991606 - 10991565
Alignment:
Q  236 gtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||    
T  10991606 gtcgggattcgaacccggaccttacatatattatgtattgtc 10991565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 41682389 - 41682422
Alignment:
Q  241 gatttgaacccgaaccttacatatattatgcatt 274  Q
    ||||||||||| ||||||||||||||||||||||    
T  41682389 gatttgaaccctaaccttacatatattatgcatt 41682422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 3196628 - 3196584
Alignment:
Q  233 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 276  Q
    ||||||| |||||||| | ||||||||||||||||||||||||||    
T  3196628 gtggtcgagatttgaatctcgaaccttacatatattatgcattgt 3196584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 4238810 - 4238782
Alignment:
Q  249 cccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||||||||||||||||    
T  4238810 cccgaaccttacatatattatgcattgtc 4238782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 277
Target Start/End: Original strand, 20120719 - 20120759
Alignment:
Q  238 cgggatttgaaccc-gaaccttacatatattatgcattgtc 277  Q
    |||||||||||||| ||||||| ||||||||||||||||||    
T  20120719 cgggatttgaaccccgaaccttgcatatattatgcattgtc 20120759  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 22267580 - 22267536
Alignment:
Q  233 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 277  Q
    ||||||||| ||||||| | |||||| ||||||||||||||||||    
T  22267580 gtggtcggggtttgaactcaaaccttgcatatattatgcattgtc 22267536  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 24581010 - 24581054
Alignment:
Q  233 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 276  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||    
T  24581010 gtggtcggggtttgaacctcgaaccttgcatatattatgcattgt 24581054  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 25395435 - 25395479
Alignment:
Q  233 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 276  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||    
T  25395435 gtggtcgggatttgaaccttgaaccttgcatatattatgcattgt 25395479  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 41542993 - 41543021
Alignment:
Q  249 cccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||||||||||||||||    
T  41542993 cccgaaccttacatatattatgcattgtc 41543021  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 189982 - 190010
Alignment:
Q  249 cccgaaccttacatatattatgcattgtc 277  Q
    |||||||||||||||||||||||||||||    
T  189982 cccgaaccttacatatattatgcattgtc 190010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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