View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3748_low_6 (Length: 267)
Name: NF3748_low_6
Description: NF3748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3748_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 31654300 - 31654530
Alignment:
| Q |
1 |
ttctgctctattcgttctttttcaagactcgttcttaataaatgttcactataataaatgacatacattcatccataacgatgaaatttcttaaatgtga |
100 |
Q |
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| T |
31654300 |
ttcttctctattcgttcttttttaagacttgttcttcataaatgttcactataataaatgatatacattcatccataacgatgaaattttttaaatgtga |
31654399 |
T |
|
| Q |
101 |
acattatgcgaaaactataacttctttgaaaaggcatagcttacgacatctatggttgctattaaaactactaaccatggatgttggatctcccattagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
31654400 |
acattatgcgaaaactataacttctttgaaaaggcatagcttacgacatctatggttgctattaaaactactaaccatggatgttggacctccctttagc |
31654499 |
T |
|
| Q |
201 |
tttcttcaccacgattttattcctttgagta |
231 |
Q |
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||||||||||||||||||||| ||||||||| |
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| T |
31654500 |
tttcttcaccacgattttatttctttgagta |
31654530 |
T |
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