View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3749_high_4 (Length: 482)
Name: NF3749_high_4
Description: NF3749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3749_high_4 |
 | |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
| [»] scaffold0719 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 17 - 472
Target Start/End: Original strand, 5312408 - 5312861
Alignment:
| Q |
17 |
acatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgcttttgttaactactcaaatagaactgaggc |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5312408 |
acatagtaatagcattttatgcattaatcagaactatttctgttgtagtttcacctctaatactctatgcttttgttaactacgcaaatagaactgaggc |
5312507 |
T |
|
| Q |
117 |
agatctcaaacaaggtcttttaatagttggttttctgattctcaccaaattagtcgagtctctgtctcaacgacattggttttttaactcaaggaggtca |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5312508 |
agatctcaaacaaggtctttcaatagttggttttctgattctcaccaaattggtcgagtctctgtctcaacgacattggtttttt--ctcaaggaggtca |
5312605 |
T |
|
| Q |
217 |
ggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaaggacaagacactcaaccggcgaaattgtga |
316 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5312606 |
ggaatgaaaatgagatcagctttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaaggacaagacactcaaccggcgaaattttga |
5312705 |
T |
|
| Q |
317 |
attacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtccattgctattct |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5312706 |
attacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtccattgctattct |
5312805 |
T |
|
| Q |
417 |
ttttgttgttgttggtattggtgctcttcccggtttagtgcctcttctcatctgtg |
472 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5312806 |
ttttggtgttgttggtattggtgctcttcccggtttagtgcctcttctcatctgtg |
5312861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 17 - 464
Target Start/End: Original strand, 5305196 - 5305643
Alignment:
| Q |
17 |
acatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgcttttgttaactactcaaatagaactgaggc |
116 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5305196 |
acatattaatagcattttatgcattaatcagaactatttcggttgccatttcacctcttatactctatgcttttgttaactactcaaatagaactgaggc |
5305295 |
T |
|
| Q |
117 |
agatctcaaacaaggtcttttaatagttggttttctgattctcaccaaattagtcgagtctctgtctcaacgacattggttttttaactcaaggaggtca |
216 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||| |||| | | |||||| ||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
5305296 |
agatctcaaacaaggtcttaccatagtttgttttctgattctcaacaaagttttggagtctttgtctcagagacattggtttttcaactcaaggaggtca |
5305395 |
T |
|
| Q |
217 |
ggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaaggacaagacactcaaccggcgaaattgtga |
316 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||| ||| |||||| |||||||||| ||||||||||||||| |
|
|
| T |
5305396 |
ggaatgaaaatgagatcagctttgatggcagcagtttatcaaaagcagctaaagctttctagcccggcaagaacaagacacttggccggcgaaattgtga |
5305495 |
T |
|
| Q |
317 |
attacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtccattgctattct |
416 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || |
|
|
| T |
5305496 |
attacattgtagttgatgcatatagaatgggagaattcccatggtggtttcatataacatggacttgtgcattgcaacttgttctttccattgttatcct |
5305595 |
T |
|
| Q |
417 |
ttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
464 |
Q |
| |
|
||||| |||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
5305596 |
ttttggtgttgtaggtattggtgctcttcctggtttagtccctcttct |
5305643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 464
Target Start/End: Complemental strand, 5284407 - 5283960
Alignment:
| Q |
17 |
acatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgcttttgttaactactcaaatagaactgaggc |
116 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5284407 |
acatattaatagcattttatgcattaatcagaactatttctgctgtagtttcacctcttatactttatgcttttgttaactactcaaatagaactgaggc |
5284308 |
T |
|
| Q |
117 |
agatctcaaacaaggtcttttaatagttggttttctgattctcaccaaattagtcgagtctctgtctcaacgacattggttttttaactcaaggaggtca |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || | ||||| ||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5284307 |
agatctcaaacaaggtctttccatagttggtattttaattctaaccaaattagttgattctctgtctcaaagacattggttttttaactcaaggaggtca |
5284208 |
T |
|
| Q |
217 |
ggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaaggacaagacactcaaccggcgaaattgtga |
316 |
Q |
| |
|
||||||||||||| ||||| | | ||||||||| |||||| |||||| ||||||||||| ||| |||||||||||||||||| |||| |||||||||| |
|
|
| T |
5284207 |
ggaatgaaaatgagatcagctcttatggtggcaatttatcaaaagcaactaaagctttctagctcggcaaggacaagacactcggccggtgaaattgtga |
5284108 |
T |
|
| Q |
317 |
attacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtccattgctattct |
416 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| | ||| ||||| |||| ||| |||||| |
|
|
| T |
5284107 |
attacattgtagttgatgcatatagaatgggagaatttccatggtggtttcatatggcatgggcttctgcacttcaaattgttttgtctatttttattct |
5284008 |
T |
|
| Q |
417 |
ttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
464 |
Q |
| |
|
||||| |||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
5284007 |
ttttggtgttgtaggtattggtgctcttccaggtttagtccctcttct |
5283960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 464
Target Start/End: Original strand, 15124445 - 15124892
Alignment:
| Q |
17 |
acatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgcttttgttaactactcaaatagaactgaggc |
116 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15124445 |
acatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaatactctatgcttttgttaactactcaaatagaactgagga |
15124544 |
T |
|
| Q |
117 |
agatctcaaacaaggtcttttaatagttggttttctgattctcaccaaattagtcgagtctctgtctcaacgacattggttttttaactcaaggaggtca |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || || |||| ||| | | ||||| | |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15124545 |
agatctcaaacaaggtctttccatagttggttttttggttgtcactaaagtctttgagtcggtatctcaaagacattggttttttaactcaaggaggtca |
15124644 |
T |
|
| Q |
217 |
ggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaaggacaagacactcaaccggcgaaattgtga |
316 |
Q |
| |
|
|| |||||||||| ||||| | | ||||| |||||||||| |||||||||||||||||| ||| |||||||| ||||||||| ||| |||||||||| |
|
|
| T |
15124645 |
ggtatgaaaatgagatcagctctaatggtagcagtttatcaaaagcagctaaagctttctagctcggcaaggaaaagacactcggtcggagaaattgtga |
15124744 |
T |
|
| Q |
317 |
attacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtccattgctattct |
416 |
Q |
| |
|
||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| | |||| |
|
|
| T |
15124745 |
attacattgcagttgattcttatagaatgggagaatttccatggtggtttcatataacatggacttctgcattgcaactttttctttccaccagtgttct |
15124844 |
T |
|
| Q |
417 |
ttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
464 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15124845 |
ctttattgttgttggtattggtgctcttcctggtttagtgcctcttct |
15124892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 464
Target Start/End: Complemental strand, 14951222 - 14950774
Alignment:
| Q |
17 |
acatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgcttttgttaactactcaaatagaactgaggc |
116 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14951222 |
acatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctgatactctatgcttttgttaactactcaaatagaactgagga |
14951123 |
T |
|
| Q |
117 |
agatctcaaacaaggtcttttaatagttggttttctgattctcaccaaattagtcgagtctctgtctcaacgacattggttttttaactcaag-gaggtc |
215 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || || |||| ||| | | ||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
14951122 |
agatctcaaacaaggtctttccatagttggttttttggttgtcactaaagtctttgagtctctgtctcaaagacattggttttttaactcaaaagaggtc |
14951023 |
T |
|
| Q |
216 |
aggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaaggacaagacactcaaccggcgaaattgtg |
315 |
Q |
| |
|
||| |||||||||| ||||| | | ||||| |||||||||| |||||||||||||||||||||| |||||||| || ||||| |||| ||||||||| |
|
|
| T |
14951022 |
aggtatgaaaatgagatcagctctaatggtagcagtttatcaaaagcagctaaagctttcaagctcggcaaggatgaggcactcggccggagaaattgtg |
14950923 |
T |
|
| Q |
316 |
aattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtccattgctattc |
415 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| || |||| | | | |
|
|
| T |
14950922 |
aattacattgcagttgatgcttatagaatgggagaatttccatggtggtttcatatggcatggacttctgtattgcaacttgttctttctattggtgtcc |
14950823 |
T |
|
| Q |
416 |
tttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
464 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
14950822 |
ttttttttgttgttggtattggtgctcttcctggtttagtccctcttct |
14950774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 464
Target Start/End: Complemental strand, 5291902 - 5291455
Alignment:
| Q |
17 |
acatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgcttttgttaactactcaaatagaactgaggc |
116 |
Q |
| |
|
||||| |||||||||||||||||||| | |||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5291902 |
acatattaatagcattttatgcattaataagaactgtttcggttgcagtttcacctcttatactctatgcttttgttaactactcaaatagaaccgaggc |
5291803 |
T |
|
| Q |
117 |
agatctcaaacaaggtcttttaatagttggttttctgattctcaccaaattagtcgagtctctgtctcaacgacattggttttttaactcaaggaggtca |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || |||||||||||||| | | |||||| | |||||| | ||||||||||||||||||||||||||| |
|
|
| T |
5291802 |
agatctcaaacaaggtctttccatagttggtattttgattctcaccaaagtttttgagtctttatctcaaaggcattggttttttaactcaaggaggtca |
5291703 |
T |
|
| Q |
217 |
ggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaaggacaagacactcaaccggcgaaattgtga |
316 |
Q |
| |
|
||||||||||||| ||||| | | |||||||| ||||| ||||||||| |||||||||| ||| ||||||| |||||||| |||| |||||||||| |
|
|
| T |
5291702 |
ggaatgaaaatgagatcagctcttatggtggcggtttaccgaaagcagttaaagctttctagctcggcaaggcagagacactcggccggtgaaattgtga |
5291603 |
T |
|
| Q |
317 |
attacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtccattgctattct |
416 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| |||||| | | || |
|
|
| T |
5291602 |
attacattgcagttgatgcatacagaatgggagaatttccatggtggtttcatacaacatggacttgtgcatttcaacttattctttccattagtgtcct |
5291503 |
T |
|
| Q |
417 |
ttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
464 |
Q |
| |
|
|||| |||||| ||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
5291502 |
ctttggtgttgtcggtgttggtgctcttcctggtttagtccctcttct |
5291455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 462
Target Start/End: Complemental strand, 31527904 - 31527459
Alignment:
| Q |
17 |
acatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgcttttgttaactactcaaatagaactgaggc |
116 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
31527904 |
acatattaatagcattctatgcactactcagaactatttctgttgtagttttacctctaattctctatgcttttgttaactactcaagtagaaccgaggg |
31527805 |
T |
|
| Q |
117 |
agatctcaaacaaggtcttttaatagttggttttctgattctcaccaaattagtcgagtctctgtctcaacgacattggttttttaactcaaggaggtca |
216 |
Q |
| |
|
| |||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||| | |
|
|
| T |
31527804 |
aaatctcagagaaggtctttccatagttggttttctgattctcaccaaattagtcgagtctttttcccagagacattggttttttaactcaaggaggtta |
31527705 |
T |
|
| Q |
217 |
ggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaaggacaagacactcaaccggcgaaattgtga |
316 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||| ||| || || || ||||||||| |||| |||||||||| |
|
|
| T |
31527704 |
ggaatgaaaatgagatcagctctgatggtggcagtttatgagaagcagctaaagctttctagctcgggaaagataagacactcggccggtgaaattgtga |
31527605 |
T |
|
| Q |
317 |
attacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtccattgctattct |
416 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| | || |
|
|
| T |
31527604 |
attacattgcagttgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtatactacaacttgttctgtccattgctgtcct |
31527505 |
T |
|
| Q |
417 |
ttttgttgttgttggtattggtgctcttcccggtttagtgcctctt |
462 |
Q |
| |
|
||| | |||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
31527504 |
tttcggtgttgttggtattggtgctcttcctggtttagtccctctt |
31527459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 21177786 - 21177706
Alignment:
| Q |
23 |
taatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgcttttgttaactactcaa |
103 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21177786 |
taatggcattttatgcattaatcagaactatatctgttttagtttcacctctaatactctatgctattgttaactactcaa |
21177706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 21264025 - 21263930
Alignment:
| Q |
17 |
acatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgcttttgttaact-actcaaatagaact |
111 |
Q |
| |
|
||||| ||||||||||||||| |||| |||||||||||||| ||||||||||||||||||| ||||| || ||||| ||| |||||||||||||| |
|
|
| T |
21264025 |
acatattaatagcattttatgaattaatcagaactatttctattgtagtttcacctctaatcttctattctattgttgactaactcaaatagaact |
21263930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 21297879 - 21297785
Alignment:
| Q |
17 |
acatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgcttttgttaactactcaaatagaact |
111 |
Q |
| |
|
||||| |||||||| ||||||||| | |||||||||| |||||||||||||||| ||||||| | || || ||||||| ||||||||||||||| |
|
|
| T |
21297879 |
acatattaatagcagtttatgcataaatcagaactatctctgttgtagtttcacatctaatattatactctattgttaattactcaaatagaact |
21297785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 21260141 - 21260087
Alignment:
| Q |
30 |
attttatgcattactcagaactatttctgttgtagtttcacctctaatactctat |
84 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
21260141 |
attttatgcattacacagaactattgttgttgtagtttgacctctaatactctat |
21260087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 21109209 - 21109146
Alignment:
| Q |
17 |
acatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatact |
80 |
Q |
| |
|
||||| |||||||||||||||||||| ||| || || ||||| |||| ||||||||||| |||| |
|
|
| T |
21109209 |
acatattaatagcattttatgcattaatcataattacttctgctgtaatttcacctctattact |
21109146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 19962 - 19913
Alignment:
| Q |
62 |
tagtttcacctctaatactctatgcttttgttaactactcaaatagaact |
111 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
19962 |
tagtttcacctctaatactctatactattgttaactaatcaaatagaact |
19913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 39775 - 39824
Alignment:
| Q |
62 |
tagtttcacctctaatactctatgcttttgttaactactcaaatagaact |
111 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
39775 |
tagtttcacctctaatactctatactattgttaactaatcaaatagaact |
39824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 48737 - 48774
Alignment:
| Q |
74 |
taatactctatgcttttgttaactactcaaatagaact |
111 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
48737 |
taatactctatgctattgtcaactactcaaatagaact |
48774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0719
Description:
Target: scaffold0719; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 5889 - 5840
Alignment:
| Q |
62 |
tagtttcacctctaatactctatgcttttgttaactactcaaatagaact |
111 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
5889 |
tagtttcacctctaatactctaaactattgttaactaatcaaatagaact |
5840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 11831754 - 11831689
Alignment:
| Q |
48 |
aactatttctgttgtagtttcacctctaatactcta--tgcttttgttaactactcaaatagaact |
111 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || |||| |||||||||| | | |||||||| |
|
|
| T |
11831754 |
aactatttctattgtagtttcacctctaatactatatgtgctattgttaactaattacatagaact |
11831689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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