View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3749_high_7 (Length: 406)
Name: NF3749_high_7
Description: NF3749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3749_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 391
Target Start/End: Complemental strand, 47601726 - 47601352
Alignment:
| Q |
20 |
atatccacctatccactagttcctgggtatgctttaattaaaatcactactact-caccattatcttagaaatt--cttagctttttccattactttatt |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47601726 |
atatccacctatccactagttcctgggtatgctttaattaaaatcaccactacttcaccattatcttagaaattgtcttagctttttccattactttatt |
47601627 |
T |
|
| Q |
117 |
ttgattctaattagtataagaaatacagacatgagattgttggtatagtgacaaaagtgggaagcaaagtagaaaagttcaaagttggagataaagtggg |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47601626 |
ttgattctaatttatataagaaatacagacatgagattgttggtatagtgacaaaagtgggaagcaaagtagaaaagttcaaagttggagacaaagtggg |
47601527 |
T |
|
| Q |
217 |
tgttggcttcatgatcgattcatgcagatcgtgtcaaaattgtgctgaaaatctcgaaagttattgtcctcgctttacagccacatgtggtgccaaatat |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47601526 |
tgttggcttcatgatcgattcatgcagatcgtgtcaaaattgtgctgaaaatcttgaaagttattgtcctcgctttacagccacatgtggtgccaaatat |
47601427 |
T |
|
| Q |
317 |
cgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattccc |
391 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47601426 |
cgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattccc |
47601352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 113 - 390
Target Start/End: Original strand, 13388939 - 13389216
Alignment:
| Q |
113 |
tattttgattctaattagtataagaaatacagacatgagattgttggtatagtgacaaaagtgggaagcaaagtagaaaagttcaaagttggagataaag |
212 |
Q |
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||||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |
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| T |
13388939 |
tatttagattctaatttatataataaatacaggcatgagattgttggtatagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaag |
13389038 |
T |
|
| Q |
213 |
tgggtgttggcttcatgatcgattcatgcagatcgtgtcaaaattgtgctgaaaatctcgaaagttattgtcctcgctttacagccacatgtggtgccaa |
312 |
Q |
| |
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| |||||||||| |||| | |||||||| |||| ||||||||||||| ||| ||||| |||| ||| ||||| ||||| ||||||||||||||| |
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| T |
13389039 |
taggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgttgacaatcttgaaaattactgtcccacatttactttcacatgtggtgccaa |
13389138 |
T |
|
| Q |
313 |
atatcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc |
390 |
Q |
| |
|
||||| ||||| || | |||||| |||||||| ||||||||| |||||| ||| ||| |||| |||||||||||||| |
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| T |
13389139 |
gtatcgcgatggaacgagcacatatggaggttattctgactcattggttgcagatgagaacttcgtggttcacattcc |
13389216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 116 - 390
Target Start/End: Original strand, 13385121 - 13385395
Alignment:
| Q |
116 |
tttgattctaattagtataagaaatacagacatgagattgttggtatagtgacaaaagtgggaagcaaagtagaaaagttcaaagttggagataaagtgg |
215 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| | |
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| T |
13385121 |
tttgattctaatttatataagaaatacaggcatgagattgttggtatagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtag |
13385220 |
T |
|
| Q |
216 |
gtgttggcttcatgatcgattcatgcagatcgtgtcaaaattgtgctgaaaatctcgaaagttattgtcctcgc-tttacagccacatgtggtgccaaat |
314 |
Q |
| |
|
||||||||| ||| || |||||||| |||||||||||||||||| ||| ||||| |||| ||| || || ||| | || | ||| ||||| || |
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| T |
13385221 |
gtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgttgacaatcttgaaaattactg-ccccgcatacactactacagttggtggcatgc |
13385319 |
T |
|
| Q |
315 |
atcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc |
390 |
Q |
| |
|
|||||||||| |||| |||| |||||||||| ||||||||| ||||||| | ||| |||| |||||||||||||| |
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|
| T |
13385320 |
atcgtgatggaaccatcacacacggaggttattctgactcattggttgtggctgagaacttcgtggttcacattcc |
13385395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 176 - 390
Target Start/End: Complemental strand, 13419745 - 13419531
Alignment:
| Q |
176 |
ggaagcaaagtagaaaagttcaaagttggagataaagtgggtgttggcttcatgatcgattcatgcagatcgtgtcaaaattgtgctgaaaatctcgaaa |
275 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| ||||| || | |||| | |||||||| | || || |||||||||||||| |||| || | |
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|
| T |
13419745 |
ggaagcaaagtagaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgaga |
13419646 |
T |
|
| Q |
276 |
gttattgtcctcgctttacagccacatgtggtgccaaatatcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactt |
375 |
Q |
| |
|
||| || || ||||||| |||||||||||| || ||||||||||||||| |||||| ||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
13419645 |
attactgcccaacatttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactt |
13419546 |
T |
|
| Q |
376 |
tgtggttcacattcc |
390 |
Q |
| |
|
|||| ||| |||||| |
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|
| T |
13419545 |
tgtgattcgcattcc |
13419531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 124 - 390
Target Start/End: Complemental strand, 13413452 - 13413186
Alignment:
| Q |
124 |
taattagtataagaaatacagacatgagattgttggtatagtgacaaaagtgggaagcaaagtagaaaagttcaaagttggagataaagtgggtgttggc |
223 |
Q |
| |
|
||||| || ||| |||||||| |||||| ||| |||||||| ||| |||| ||||||||||| || ||||| ||||||||||| ||||| ||||||||| |
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|
| T |
13413452 |
taattggtgtaataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggc |
13413353 |
T |
|
| Q |
224 |
ttcatgatcgattcatgcagatcgtgtcaaaattgtgctgaaaatctcgaaagttattgtcctcgctttacagccacatgtggtgccaaatatcgtgatg |
323 |
Q |
| |
|
| | |||| |||||||| |||| || ||| ||||| ||| ||||| || | ||| || || ||| || ||||||||||||||| |||||||||| |
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|
| T |
13413352 |
tacttgattgattcatgtcgatcatgccaagattgtaatgacaatcttgagaattactgccccaaatttgtagtcacatgtggtgccaagtatcgtgatg |
13413253 |
T |
|
| Q |
324 |
gcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc |
390 |
Q |
| |
|
| ||| ||| || ||||||||||| ||||||||||||| |||||||||||||||| ||| |||||| |
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|
| T |
13413252 |
gaaccgtcacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcc |
13413186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 390
Target Start/End: Complemental strand, 13426636 - 13426422
Alignment:
| Q |
176 |
ggaagcaaagtagaaaagttcaaagttggagataaagtgggtgttggcttcatgatcgattcatgcagatcgtgtcaaaattgtgctgaaaatctcgaaa |
275 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| || || || | |||| | |||||||| | || || |||||||||| ||| |||| || | |
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|
| T |
13426636 |
ggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtcgttcatgcgaaaattgtgcggaagatcttgaga |
13426537 |
T |
|
| Q |
276 |
gttattgtcctcgctttacagccacatgtggtgccaaatatcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactt |
375 |
Q |
| |
|
||| || || | |||| ||||||||||| || ||||||||||||| | |||||| |||||||| || ||||||||||||| ||| |||||||| |
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|
| T |
13426536 |
attactgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggaggttattccgactcaatggttgcagatgagcactt |
13426437 |
T |
|
| Q |
376 |
tgtggttcacattcc |
390 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
13426436 |
tgtgattcgcattcc |
13426422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 390
Target Start/End: Complemental strand, 13454283 - 13454035
Alignment:
| Q |
142 |
cagacatgagattgttggtatagtgacaaaagtgggaagcaaagtagaaaagttcaaagttggagataaagtgggtgttggcttcatgatcgattcatgc |
241 |
Q |
| |
|
||||||||| |||||||| ||||| ||| |||||||||||||||| ||||||||||||||||||| | ||| ||||| || | | || | ||||| || |
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|
| T |
13454283 |
cagacatgaaattgttggcatagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgt |
13454184 |
T |
|
| Q |
242 |
agatcgtgtcaaaattgtgctgaaaatctcgaaagttattgtcctcgctttacagccacatgtggtgccaaatatcgtgatggcaccaccacatacggag |
341 |
Q |
| |
|
|| ||||||||||||| ||| ||||| || | ||| ||||| | || ||| ||| |||| ||||||| ||||||| |||| ||| | |||| |
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|
| T |
13454183 |
cactcatgtcaaaattgtgttgataatcttgagaattactgtccccaattgacactcactgatggttccaaatacagtgatggaaccagcactcatggag |
13454084 |
T |
|
| Q |
342 |
gttactctgactcaatggttgtagacgagcactttgtggttcacattcc |
390 |
Q |
| |
|
| | |||||||||||||||| ||||||||||||||| ||| |||||| |
|
|
| T |
13454083 |
gcttctctgactcaatggtttccgacgagcactttgtgtttcgcattcc |
13454035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 13393379 - 13393452
Alignment:
| Q |
146 |
catgagattgttggtatagtgacaaaagtgggaagcaaagtagaaaagttcaaagttggagataaagtgggtgt |
219 |
Q |
| |
|
|||||||||| |||||||||||| | || |||||||||||||| ||||||||| ||||||| ||||||||||| |
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|
| T |
13393379 |
catgagattgctggtatagtgacggaggtaggaagcaaagtagagaagttcaaaattggagacaaagtgggtgt |
13393452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 390
Target Start/End: Original strand, 13393539 - 13393623
Alignment:
| Q |
306 |
gtgccaaatatcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc |
390 |
Q |
| |
|
|||||||||| ||||||| | || |||||| ||||| ||||||||||||||||||| ||| ||||||||| | ||||||||||| |
|
|
| T |
13393539 |
gtgccaaatacagtgatggaagcatcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcc |
13393623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 390
Target Start/End: Complemental strand, 13447156 - 13447082
Alignment:
| Q |
316 |
tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc |
390 |
Q |
| |
|
|||||||||||| | ||| || ||||||| ||| ||||||||||||| |||||||||||||||| ||| |||||| |
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|
| T |
13447156 |
tcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc |
13447082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 13447299 - 13447259
Alignment:
| Q |
173 |
gtgggaagcaaagtagaaaagttcaaagttggagataaagt |
213 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
13447299 |
gtgggaagcaaagtaaaaaagtttaaagttggagacaaagt |
13447259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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