View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3749_high_9 (Length: 386)
Name: NF3749_high_9
Description: NF3749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3749_high_9 |
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| [»] scaffold0110 (5 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 30023 - 30397
Alignment:
| Q |
1 |
gataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctggaaattcaggaactgagccttatactgtagctcacaatttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30023 |
gataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctggaaattcaggaactgagccttatactgtagctcacaatttga |
30122 |
T |
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| Q |
101 |
tattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcgtttttagattaagtatgtgtttggattagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30123 |
tattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaatattagtattttgattcgtttttagattaagtatgtgtttggattagca |
30222 |
T |
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| Q |
201 |
gtgagtttgtcagagtcatgatgtgccatagtgatttcggcaaaaactacactttgccgcttcaacaaagtcacatggtgcaactgtgatttcatcaaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30223 |
gtgagtttgtcagagtcatgatgtgccatagtgatttaggcaaaaactacactttgcagcttcaacaaagtcacatggtgcaactgtgatttcgtcaaac |
30322 |
T |
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| Q |
301 |
ttgatgtgattcttattatgcactaagtggtttatttaatttgttcttctgatgtttttatcttgtggtgatgat |
375 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30323 |
ttgatgtgattcttattatgcactaagtggtttattcaatttgttcttctgatgtttttatcttgtggtgatgat |
30397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 13166 - 13397
Alignment:
| Q |
1 |
gataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctggaaattcaggaactgagccttatactgtagctcacaatttga |
100 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13166 |
gatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaatttga |
13265 |
T |
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| Q |
101 |
tattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcgtttttagattaagtatgtgtttggattagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| | |
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| T |
13266 |
tattgtcacatgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgattcatttttagattaagtgtgtgtttagattatcc |
13365 |
T |
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| Q |
201 |
gtgagtttgtcagagtcatgatgtgccatagt |
232 |
Q |
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| T |
13366 |
atgagtttgctagaatcacgatgtgtcatagt |
13397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 20903 - 21134
Alignment:
| Q |
1 |
gataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctggaaattcaggaactgagccttatactgtagctcacaatttga |
100 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20903 |
gatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaatttga |
21002 |
T |
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| Q |
101 |
tattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcgtttttagattaagtatgtgtttggattagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| | |
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| T |
21003 |
tattgtcacatgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgattcatttttagattaagtgtgtgtttagattatcc |
21102 |
T |
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| Q |
201 |
gtgagtttgtcagagtcatgatgtgccatagt |
232 |
Q |
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|||||||| ||| ||| |||||| |||||| |
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| T |
21103 |
atgagtttgctagaatcacgatgtgtcatagt |
21134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 202 - 327
Target Start/End: Original strand, 13398 - 13523
Alignment:
| Q |
202 |
tgagtttgtcagagtcatgatgtgccatagtgatttcggcaaaaactacactttgccgcttcaacaaagtcacatggtgcaactgtgatttcatcaaact |
301 |
Q |
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||||||||||| | ||| |||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||| ||||||||||||||||| ||||||| |
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| T |
13398 |
tgagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaactacattttgaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaact |
13497 |
T |
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| Q |
302 |
tgatgtgattcttattatgcactaag |
327 |
Q |
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||| ||||| | || |||||||||| |
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| T |
13498 |
cgatttgattttcatcatgcactaag |
13523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 202 - 327
Target Start/End: Original strand, 21135 - 21260
Alignment:
| Q |
202 |
tgagtttgtcagagtcatgatgtgccatagtgatttcggcaaaaactacactttgccgcttcaacaaagtcacatggtgcaactgtgatttcatcaaact |
301 |
Q |
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||||||||||| | ||| |||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||| ||||||||||||||||| ||||||| |
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| T |
21135 |
tgagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaactacattttgaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaact |
21234 |
T |
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| Q |
302 |
tgatgtgattcttattatgcactaag |
327 |
Q |
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||| ||||| | || |||||||||| |
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| T |
21235 |
cgatttgattttcatcatgcactaag |
21260 |
T |
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