View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3749_low_10 (Length: 389)
Name: NF3749_low_10
Description: NF3749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3749_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 33871778 - 33871457
Alignment:
| Q |
16 |
ataggagaaatttggatctacagggaaaacccaagttatgttgaaatttgaattggctacatttgcatcccccattgcttccgcagtagcatagacccaa |
115 |
Q |
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| T |
33871778 |
ataggagaaatttggatctacagggaaaacccaagttatgttgaaatttgaattggctacatttgcatcccccattgcttccgcagtagcatagacccaa |
33871679 |
T |
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| Q |
116 |
ttaggtgctgtctcagcagtaacgcccggtcgatacttaatgcttgtagggctgaccgacacattagtgaccgaactgttcacatgaaggtatttctgat |
215 |
Q |
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| T |
33871678 |
ttaggtgctgtctcagcagtaacgcccggtcgatacttaatgcttgtagggctgaccgacacattagtgaccgaactgttcacatgaaggtatttctgat |
33871579 |
T |
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| Q |
216 |
cattctcccaagtccttcccaacgtgtcattttcggcagtaagcaaggctcctcctatgttcaaacggtaaacggtttcgaaagcaagttcggaaagacc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33871578 |
cattctcccaagtccttcccaacgtgtcattttcggcagtaagcaaggctcctcctatgttcaaacggtaaacggtttcgaaagcaagttcggaaagacc |
33871479 |
T |
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| Q |
316 |
attaaaaggggccaatggacga |
337 |
Q |
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| T |
33871478 |
attaaaaggggccaatggacga |
33871457 |
T |
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