View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3749_low_12 (Length: 347)
Name: NF3749_low_12
Description: NF3749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3749_low_12 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] scaffold0287 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 3619753 - 3620081
Alignment:
| Q |
19 |
ctacgccctgcaccgaatggaataaactcgaaattttgtcccttaaaatctatatcattatttaagaatctctctggataatactcgtcagggtctttcc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
3619753 |
ctacgccctgcaccgaatggaataaactcgaaattttgtcccttaaaatctatatcattgtttaagaatctctctggataaaactcatcggggtctttcc |
3619852 |
T |
|
| Q |
119 |
atgtctcagggtccctatgaatggcccaaatattcacaaacaccgacgtttttggttctattttatatccatttagaatgaaacctttactggtctctct |
218 |
Q |
| |
|
||||||| |||||||||||||| | ||||||| |||||||||| || ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
3619853 |
atgtctcggggtccctatgaatagaccaaatactcacaaacactgatgtttttggttctattttatatccatttagtgtgaaacttttactggtctctct |
3619952 |
T |
|
| Q |
219 |
tggggctaggggtgctggtgaatagaatcttaatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaactctttt |
318 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3619953 |
aggggctagtggtgctggtgaatagaatcttaatgtctcttttatcacagccttaaaatatacaaacttttgaatatcatcttcatctatgaactctttt |
3620052 |
T |
|
| Q |
319 |
ttgatgtttctaatttcttcttgagcttt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3620053 |
ttgatgtttctaatttcttcttgagcttt |
3620081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 3630129 - 3630463
Alignment:
| Q |
19 |
ctacgccctgcaccgaatggaataaactcgaaattttgtcccttaaaatctatatcattatttaagaatctctctggataatactcgtcagggtctttcc |
118 |
Q |
| |
|
|||||||||||||| ||||| || ||||| |||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
3630129 |
ctacgccctgcaccaaatggtatcaactcaaaatcccgtcctttaaaatctatatcattgtttaagaatctctctggataaaactcgtcgggatctttcc |
3630228 |
T |
|
| Q |
119 |
atgtctcagggtccctatgaatggcccaaatattcacaaacaccgacgtttttggttctattttatatccatttagaatgaaacctttactggtctctct |
218 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
3630229 |
atgcctcggggtccctatgaatggcccaaatattcacaaacactgatgtttttggttctattttatgtccatttagaatgaaacttttactggtctctct |
3630328 |
T |
|
| Q |
219 |
tggggctaggggtgctggtgaatagaatcttaatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaactctttt |
318 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3630329 |
tggggctagtggtgctggtgcatagaatcttaatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaactctttt |
3630428 |
T |
|
| Q |
319 |
ttg------atgtttctaatttcttcttgagcttt |
347 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
3630429 |
ttgccacatatgtttctaatttcttcttgagcttt |
3630463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 15956 - 15622
Alignment:
| Q |
19 |
ctacgccctgcaccgaatggaataaactcgaaattttgtcccttaaaatctatatcattatttaagaatctctctggataatactcgtcagggtctttcc |
118 |
Q |
| |
|
|||||||||||||| ||||| || ||||| |||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
15956 |
ctacgccctgcaccaaatggtatcaactcaaaatcccgtcctttaaaatctatatcattgtttaagaatctctctggataaaactcgtcgggatctttcc |
15857 |
T |
|
| Q |
119 |
atgtctcagggtccctatgaatggcccaaatattcacaaacaccgacgtttttggttctattttatatccatttagaatgaaacctttactggtctctct |
218 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
15856 |
atgcctcggggtccctatgaatggcccaaatattcacaaacactgatgtttttggttctattttatgtccatttagaatgaaacttttactggtctctct |
15757 |
T |
|
| Q |
219 |
tggggctaggggtgctggtgaatagaatcttaatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaactctttt |
318 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15756 |
tggggctagtggtgctggtgcatagaatcttaatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaactctttt |
15657 |
T |
|
| Q |
319 |
ttg------atgtttctaatttcttcttgagcttt |
347 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
15656 |
ttgccacatatgtttctaatttcttcttgagcttt |
15622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 8979268 - 8979192
Alignment:
| Q |
244 |
aatcttaatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaactctttttt |
320 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| | |||||||||||||||||||||| || |||||||| |
|
|
| T |
8979268 |
aatcttaatgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatctttttt |
8979192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 8966432 - 8966508
Alignment:
| Q |
244 |
aatcttaatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaactctttttt |
320 |
Q |
| |
|
||||| || |||||||||||||| ||||| |||||| | ||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
8966432 |
aatctcaacgtctcttttatcactgcctttaaatatgggaaattttgaatatcattttcgtctatgaattctttttt |
8966508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 31071746 - 31071833
Alignment:
| Q |
34 |
aatggaataaactcgaaattttgtcccttaaaatctatatcattatttaagaatctctctggataatactcgtcagggtctttccatg |
121 |
Q |
| |
|
|||||||| | |||||||| |||||| || |||||||||||| || || |||||||||||||||| |||| || || || ||||||| |
|
|
| T |
31071746 |
aatggaatcagctcgaaatcttgtccttttaaatctatatcactacctatgaatctctctggataaaactcttctggatccttccatg |
31071833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University