View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3749_low_13 (Length: 319)
Name: NF3749_low_13
Description: NF3749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3749_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 33211786 - 33211546
Alignment:
| Q |
12 |
agagacataaacacaacagaaattaaacgacaaaaaagctaagatgttcaatctgagtgttgaggaataggaggataacccaggtaagaagaaagggaga |
111 |
Q |
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| T |
33211786 |
agagacataaacacaacagaaattaaacgacaaaaaagctaagatgttcaatctgagtgttgaggaataggaggataacccaggtaagaagaaagggaga |
33211687 |
T |
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| Q |
112 |
agaagaaacgttggaaaggaagacaaaagatgagacccaaaacggcgtcgctgctcaacatctcaggattacacgctatgtattgacacaacctagctga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33211686 |
agaagaaacgttggaaaggaagacaaaagatgagacccaaaacggcgtcgctgctcaacatctcaggattacacgctatgtattgacacaacctagctga |
33211587 |
T |
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| Q |
212 |
cacgtgcgccaccctcatcaccacaccgctgttcagtacca |
252 |
Q |
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| T |
33211586 |
cacgtgcgccaccctcatcaccacaccgctgttcagtacca |
33211546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Complemental strand, 33211535 - 33211505
Alignment:
| Q |
275 |
tacgttctttgtactttgattgatgttattg |
305 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
33211535 |
tacgttctttgtactttgattgatgttattg |
33211505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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