View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3749_low_17 (Length: 237)
Name: NF3749_low_17
Description: NF3749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3749_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49353135 - 49352914
Alignment:
| Q |
1 |
aaatgttttaatttgccaatagagcggggcaaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagttttca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49353135 |
aaatgttttaatttgccaatagagcggggcaaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagttttca |
49353036 |
T |
|
| Q |
101 |
agaaagcttcattgttggctcccttaggaaatatcaaggttctcaggccagtaggaaccggcgttaggccaagcaaatcatttttaagaaatgacagatg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49353035 |
agaaagcttcattgttggctcccttaggaaatatcaaggttctcaggccagtaggaaccggcgttaggccaagcaaatcatttttaagaaatgacagatg |
49352936 |
T |
|
| Q |
201 |
aaggacattctcgggtatattt |
222 |
Q |
| |
|
||||||||||||| |||||||| |
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|
| T |
49352935 |
aaggacattctcgagtatattt |
49352914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49341757 - 49341536
Alignment:
| Q |
1 |
aaatgttttaatttgccaatagagcggggcaaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagttttca |
100 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||| ||| |||||| || |||| |||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
49341757 |
aaatgttttaattttcaaatagagcggggaaaactctcatatttagaatgagctaaccgtaaaacacgcaagaatttgaaccttgacgccaatgttttca |
49341658 |
T |
|
| Q |
101 |
agaaagcttcattgttggctcccttaggaaatatcaaggttctcaggccagtaggaaccggcgttaggccaagcaaatcatttttaagaaatgacagatg |
200 |
Q |
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|||||||||||||||| |||||||| ||||||| || ||||||||| || |||||||| | ||||||||||||||||||||||||| |||||||| ||| |
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| T |
49341657 |
agaaagcttcattgttagctcccttgggaaatagcatggttctcagacctgtaggaactcgtgttaggccaagcaaatcatttttaataaatgacaaatg |
49341558 |
T |
|
| Q |
201 |
aaggacattctcgggtatattt |
222 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
49341557 |
aaggacattctcgaatatattt |
49341536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 19031019 - 19030873
Alignment:
| Q |
76 |
ttgcaccttgacaccaaagttttcaagaaagcttcattgttggctcccttaggaaatatcaaggttctcaggccagtaggaaccggcgttaggccaagca |
175 |
Q |
| |
|
||||||||||| |||||| | |||||||||||||||| ||||||||||||||||||||| | ||||| || |||||||||| || ||| |||||||| |
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| T |
19031019 |
ttgcaccttgataccaaaatgttcaagaaagcttcatcgttggctcccttaggaaatatgatagttcttagaccagtaggaattggtgttttgccaagca |
19030920 |
T |
|
| Q |
176 |
aatcatttttaagaaatgacagatgaaggacattctcgggtatattt |
222 |
Q |
| |
|
||||||||| || ||||||||||||||| | |||||| | ||||||| |
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|
| T |
19030919 |
aatcattttcaataaatgacagatgaagaatattctctgatatattt |
19030873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32783134 - 32783355
Alignment:
| Q |
1 |
aaatgttttaatttgccaatagagcggggcaaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagttttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| || |||||||||||||||||| |||||||||| | |
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|
| T |
32783134 |
aaatgttttaatttgccaatagagcggggcaaactctcatatttagaatcagctaactgtaaaagccgtaagaatttgcaccttgacgccaaagttttta |
32783233 |
T |
|
| Q |
101 |
agaaagcttcattgttggctcccttaggaaatatcaaggttctcaggccagtaggaaccggcgttaggccaagcaaatcatttttaagaaatgacagatg |
200 |
Q |
| |
|
| ||||||| || ||||||| ||| |||||||| || |||||||| ||||||||||| || |||| |||||||||||||||||||| |||||||||||| |
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| T |
32783234 |
aaaaagctttatcgttggcttcctcaggaaatagcatagttctcagaccagtaggaactggtgttacgccaagcaaatcatttttaataaatgacagatg |
32783333 |
T |
|
| Q |
201 |
aaggacattctcgggtatattt |
222 |
Q |
| |
|
||||||||||||| |||||||| |
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|
| T |
32783334 |
aaggacattctcgagtatattt |
32783355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 29601770 - 29601889
Alignment:
| Q |
1 |
aaatgttttaatttgccaatagagcggggcaaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagttttca |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| |||||||||| || |||| | ||||| ||||||||||| |||||||| ||||| | |||| |
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| T |
29601770 |
aaatgttttaatttaccaattgagcggggcaaactctcatatgtagaatgagttaaccgcaaaactcgcaagaatttacaccttgatgccaaattgttca |
29601869 |
T |
|
| Q |
101 |
agaaagcttcattgttggct |
120 |
Q |
| |
|
| |||||| ||||||||||| |
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|
| T |
29601870 |
aaaaagctacattgttggct |
29601889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 29751525 - 29751406
Alignment:
| Q |
1 |
aaatgttttaatttgccaatagagcggggcaaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagttttca |
100 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||| |||||||||| || |||| | ||||| ||||||||||| |||||||| ||||| | |||| |
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|
| T |
29751525 |
aaatgttttaatttaccaattgagcggggaaaactctcatatgtagaatgagttaaccgcaaaactcgcaagaatttacaccttgatgccaaattgttca |
29751426 |
T |
|
| Q |
101 |
agaaagcttcattgttggct |
120 |
Q |
| |
|
| |||||| ||||||||||| |
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| T |
29751425 |
aaaaagctacattgttggct |
29751406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 29744490 - 29744373
Alignment:
| Q |
1 |
aaatgttttaatttgccaatagagcggggcaaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagttttca |
100 |
Q |
| |
|
||||| |||||||| |||| |||||||| |||||||| ||| |||||| || |||||| ||||| ||||||||||| ||||||| ||||| | |||| |
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|
| T |
29744490 |
aaatgctttaatttatcaattgagcggggtaaactctcatatttagaattagttaactgcaaaactcgcaagaatttaaaccttgatgccaaattgttca |
29744391 |
T |
|
| Q |
101 |
agaaagcttcattgttgg |
118 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
29744390 |
agaaagctatattgttgg |
29744373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 35158639 - 35158521
Alignment:
| Q |
4 |
tgttttaatttgccaatagagcggggcaaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagttttcaaga |
103 |
Q |
| |
|
||||||||||| ||||| |||| ||||| ||||| ||| ||||| | || || ||||| |||||| || |||||||||| |||||||| ||||||| |
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|
| T |
35158639 |
tgttttaatttaccaatggagctaggcaagctctcatatccagaattatttatttgcaaaacccgcaagcatgtgcaccttgataccaaagtattcaaga |
35158540 |
T |
|
| Q |
104 |
aagcttcattgttggctcc |
122 |
Q |
| |
|
||||||| |||||| |||| |
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|
| T |
35158539 |
aagcttcgttgttgactcc |
35158521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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