View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3749_low_18 (Length: 233)

Name: NF3749_low_18
Description: NF3749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3749_low_18
NF3749_low_18
[»] chr3 (7 HSPs)
chr3 (82-218)||(1077748-1077883)
chr3 (82-218)||(1050844-1050980)
chr3 (84-218)||(1091628-1091762)
chr3 (84-218)||(1107990-1108124)
chr3 (1-81)||(5353345-5353426)
chr3 (1-81)||(48707484-48707563)
chr3 (1-81)||(28784789-28784870)
[»] chr5 (2 HSPs)
chr5 (1-84)||(32798282-32798365)
chr5 (1-81)||(32800594-32800674)
[»] chr2 (2 HSPs)
chr2 (1-81)||(45336535-45336615)
chr2 (1-81)||(45338847-45338927)
[»] chr1 (2 HSPs)
chr1 (1-81)||(1550433-1550513)
chr1 (1-81)||(9535532-9535612)
[»] chr4 (1 HSPs)
chr4 (1-81)||(22804887-22804967)
[»] chr8 (2 HSPs)
chr8 (5-81)||(44734435-44734512)
chr8 (5-81)||(44732122-44732199)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 1077748 - 1077883
Alignment:
Q  82 ggtatataacaactatttgaatttttgtaggcttggaggttatggaaagaaggaaattcaaaagaattgattgatgattgtctaaaggactcatatattc 181  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1077748 ggtatataacaactatttgaatttt-gtaggcttggaggttatggaaagagggaaattcaaaagaattgattgatgattgtctaaaggactcatatattc 1077846  T
Q  182 catctgaagctttaagatgcatacaagttggtctttt 218  Q
    |||||||||||||||||||||||||||||||||||||    
T  1077847 catctgaagctttaagatgcatacaagttggtctttt 1077883  T

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Target: chr3; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 1050844 - 1050980
Alignment:
Q  82 ggtatataacaactatttgaatttttgtaggcttggaggttatggaaagaaggaaattcaaaagaattgattgatgattgtctaaaggactcatatattc 181  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  1050844 ggtatatgacaactatttgaatttttgtaggcttggaggttatggaaagagggaaattcagaagaattaattgatgattgtctaaaggactcatatattc 1050943  T
Q  182 catctgaagctttaagatgcatacaagttggtctttt 218  Q
    |||||||||||||||||| ||||||||||||||||||    
T  1050944 catctgaagctttaagatccatacaagttggtctttt 1050980  T

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Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 1091628 - 1091762
Alignment:
Q  84 tatataacaactatttgaatttttgtaggcttggaggttatggaaagaaggaaattcaaaagaattgattgatgattgtctaaaggactcatatattcca 183  Q
    ||||| ||||||||||  |||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  1091628 tatatgacaactatttttatttttgtaggcttggaggttatggaaagagggaaattcggaagaattgattgatgattgtctaagggactcatatattcca 1091727  T
Q  184 tctgaagctttaagatgcatacaagttggtctttt 218  Q
    |||||||||||||||||||||||||||||||||||    
T  1091728 tctgaagctttaagatgcatacaagttggtctttt 1091762  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 1107990 - 1108124
Alignment:
Q  84 tatataacaactatttgaatttttgtaggcttggaggttatggaaagaaggaaattcaaaagaattgattgatgattgtctaaaggactcatatattcca 183  Q
    |||||||||  | |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |   ||||||||| |||| |    
T  1107990 tatataacagttgtttgtatttttgtaggcttggaggttgtggaaagaaggaaactcaaaagaattgattgaggattgtttcggggactcatacattcta 1108089  T
Q  184 tctgaagctttaagatgcatacaagttggtctttt 218  Q
    |||||||||||| | ||||||||||||||||||||    
T  1108090 tctgaagctttacgttgcatacaagttggtctttt 1108124  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 5353426 - 5353345
Alignment:
Q  1 tttcttctttcttctccaccattttt-aaccttaattttctgtcttgagcttattgattctgctgcctttgcaaaagctaac 81  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5353426 tttcttctttcttctccaccattttttaactttaattttctgtcttgagcttattgcttctgctgcctttgcaaaagctaac 5353345  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 48707563 - 48707484
Alignment:
Q  1 tttcttctttcttctccaccatttttaaccttaattttctgtcttgagcttattgattctgctgcctttgcaaaagctaac 81  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||    
T  48707563 tttcttctttcttctccaccatttttaaccttaattttcagtcttgagcttattgcttctg-tgcctttgcaaaagctaac 48707484  T

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Target: chr3; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 28784789 - 28784870
Alignment:
Q  1 tttcttctttcttctccaccatttttaa-ccttaattttctgtcttgagcttattgattctgctgcctttgcaaaagctaac 81  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28784789 tttcttctttcttttccaccattttttagccttaattttctgtcttgagcttattgcttctgctgcctttgcaaaagctaac 28784870  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 32798282 - 32798365
Alignment:
Q  1 tttcttctttcttctccaccatttttaaccttaattttctgtcttgagcttattgattctgctgcctttgcaaaagctaacggt 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32798282 tttcttctttcttctccaccatttttaaccttaattttctgtcttgagcttattgcttctgctgcctttgcaaaagctaacggt 32798365  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 32800594 - 32800674
Alignment:
Q  1 tttcttctttcttctccaccatttttaaccttaattttctgtcttgagcttattgattctgctgcctttgcaaaagctaac 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32800594 tttcttctttcttctccaccatttttaaccttaattttctgtcttgagcttattgcttctgctgcctttgcaaaagctaac 32800674  T

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Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 45336535 - 45336615
Alignment:
Q  1 tttcttctttcttctccaccatttttaaccttaattttctgtcttgagcttattgattctgctgcctttgcaaaagctaac 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45336535 tttcttctttcttctccaccatttttaaccttaattttctgtcttgagcttattgcttctgctgcctttgcaaaagctaac 45336615  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 45338847 - 45338927
Alignment:
Q  1 tttcttctttcttctccaccatttttaaccttaattttctgtcttgagcttattgattctgctgcctttgcaaaagctaac 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45338847 tttcttctttcttctccaccatttttaaccttaattttctgtcttgagcttattgcttctgctgcctttgcaaaagctaac 45338927  T

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Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1550433 - 1550513
Alignment:
Q  1 tttcttctttcttctccaccatttttaaccttaattttctgtcttgagcttattgattctgctgcctttgcaaaagctaac 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1550433 tttcttctttcttctccaccatttttaaccttaattttctgtcttgagcttattgcttctgctgcctttgcaaaagctaac 1550513  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 9535532 - 9535612
Alignment:
Q  1 tttcttctttcttctccacca-tttttaaccttaattttctgtcttgagcttattgattctgctgcctttgcaaaagctaac 81  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||| | ||||||| ||||||||||||| |||| ||||||    
T  9535532 tttcttctttcttctccaccattttttaatcttaattttctgtctt-aacttattgcttctgctgcctttccaaatgctaac 9535612  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 22804887 - 22804967
Alignment:
Q  1 tttcttctttcttctccaccatttttaaccttaattttctgtcttgagcttattgattctgctgcctttgcaaaagctaac 81  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  22804887 tttcttctttcttctccaccattttttaccttaattttctttcttgagcttattgcttctgctgcctttgcaaaagctaac 22804967  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 44734435 - 44734512
Alignment:
Q  5 ttctttcttctccaccatttt-taaccttaattttctgtcttgagcttattgattctgctgcctttgcaaaagctaac 81  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44734435 ttctttcttctccaccattttttaaccttaattttctgtcttgagcttattgcttctgctgcctttgcaaaagctaac 44734512  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 44732122 - 44732199
Alignment:
Q  5 ttctttcttctccaccatttt-taaccttaattttctgtcttgagcttattgattctgctgcctttgcaaaagctaac 81  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  44732122 ttctttcttctccaccattttttaaccttaattttatgtcttgagcttattgcttctgctgcctttgcaaaagctaac 44732199  T

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