View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3749_low_3 (Length: 626)
Name: NF3749_low_3
Description: NF3749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3749_low_3 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 7 - 607
Target Start/End: Original strand, 207305 - 207910
Alignment:
| Q |
7 |
tggacatcatcaattggatctgaatcatcatggttttgaaactgatcagacatagacatagtagtagtagtagctccccaagaagggtttgggatggtta |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
207305 |
tggaaatcatcaattggatctgaatcatcatggttttgaaactgatcagacatagacatagtagtagtagtagctccccaagaagggttagggatggtta |
207404 |
T |
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| Q |
107 |
gagaaggtggaaggttgaaaccactactaagccttgaagaagttgatgaattttgccttgaaaggaaattaggtgaaggtgatggaggagttga---agg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |
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| T |
207405 |
gagaaggtggaaggttgaaaccactactaagccttgaagaagttgatgaattttgccttgaaaggaaattaggtgatggtgatggagaagttgatgaagg |
207504 |
T |
|
| Q |
204 |
tgttggtggagagttattagaacaaggtaatcctaactcttttctagctttgaaaatcactgagtgaataagtgattcaggacttaatgctaatcttatc |
303 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
207505 |
tgttggtggagagttattagaacaaggtagtcctaactcttttctagctttgaatatcactgagtgaataagtgattcaggacttaatgctaatcttatc |
207604 |
T |
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| Q |
304 |
atttctttctcaccatgttctttactaagaagtaaacccatgatatttgatgcattttcagggtccatgtttttgatccttgaaaacaccatcttagttg |
403 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
207605 |
atttctttctcaccatgttctttactaagaagcaaacccatgatatttgatgcattttcagggtccatgcttttgatccttgaaaacaccatcttagttg |
207704 |
T |
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| Q |
404 |
cttcataaccatccatgatttgatttgtttcaagaagaag--aagnnnnnnnctagtctactctatccttaatagaaaacaaaaatataaattttatgtt |
501 |
Q |
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| T |
207705 |
cttcataaccatccatgatttgatttgtttcaagaagaaggaaaaagaaaaacaagtctactctatccttaatagaaaacaaaaatataaattttatgtt |
207804 |
T |
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| Q |
502 |
tctttctcactcctattacaagtaaagtttctttctcaaccacaaataagccctacctaccaagttaaaatgagtatgtttctttctttcacaaattcct |
601 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
207805 |
tctttctcactcctattagaagtaaagtttctttctcaaccacaaataagccctacctaccaagttaaaatgagtatgtttctttctttcacaaattcct |
207904 |
T |
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| Q |
602 |
gcaaag |
607 |
Q |
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|||||| |
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| T |
207905 |
gcaaag |
207910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 7 - 607
Target Start/End: Complemental strand, 14610072 - 14609467
Alignment:
| Q |
7 |
tggacatcatcaattggatctgaatcatcatggttttgaaactgatcagacatagacatagtagtagtagtagctccccaagaagggtttgggatggtta |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14610072 |
tggaaatcatcaattggatctgaatcatcatggttttgaaactgatcagacatagacatagtagtagtagtagctccccaagaagggttagggatggtta |
14609973 |
T |
|
| Q |
107 |
gagaaggtggaaggttgaaaccactactaagccttgaagaagttgatgaattttgccttgaaaggaaattaggtgaaggtgatggaggagttga---agg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |
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| T |
14609972 |
gagaaggtggaaggttgaaaccactactaagccttgaagaagttgatgaattttgccttgaaaggaaattaggtgatggtgatggagaagttgatgaagg |
14609873 |
T |
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| Q |
204 |
tgttggtggagagttattagaacaaggtaatcctaactcttttctagctttgaaaatcactgagtgaataagtgattcaggacttaatgctaatcttatc |
303 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14609872 |
tgttggtggagagttattagaacaaggtagtcctaactcttttctagctttgaatatcactgagtgaataagtgattcaggacttaatgctaatcttatc |
14609773 |
T |
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| Q |
304 |
atttctttctcaccatgttctttactaagaagtaaacccatgatatttgatgcattttcagggtccatgtttttgatccttgaaaacaccatcttagttg |
403 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14609772 |
atttctttctcaccatgttctttactaagaagcaaacccatgatatttgatgcattttcagggtccatgcttttgatccttgaaaacaccatcttagttg |
14609673 |
T |
|
| Q |
404 |
cttcataaccatccatgatttgatttgtttcaagaagaag--aagnnnnnnnctagtctactctatccttaatagaaaacaaaaatataaattttatgtt |
501 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14609672 |
cttcataaccatccatgatttgatttgtttcaagaagaaggaaaaagaaaaacaagtctactctatccttaatagaaaacaaaaatataaattttatgtt |
14609573 |
T |
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| Q |
502 |
tctttctcactcctattacaagtaaagtttctttctcaaccacaaataagccctacctaccaagttaaaatgagtatgtttctttctttcacaaattcct |
601 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14609572 |
tctttctcactcctattagaagtaaagtttctttctcaaccacaaataagccctacctaccaagttaaaatgagtatgtttctttctttcacaaattcct |
14609473 |
T |
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| Q |
602 |
gcaaag |
607 |
Q |
| |
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|||||| |
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| T |
14609472 |
gcaaag |
14609467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 234 - 423
Target Start/End: Complemental strand, 12080879 - 12080690
Alignment:
| Q |
234 |
tcctaactcttttctagctttgaaaatcactgagtgaataagtgattcaggacttaatgctaatcttatcatttctttctcaccatgttctttactaaga |
333 |
Q |
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||||||||| ||||||||||||||||||||||| |||| |||||||||||| || ||||| || |||||||||||||||||||| |||| | |||| |
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| T |
12080879 |
tcctaactcatttctagctttgaaaatcactgaatgaagaagtgattcaggtacaaaagctaacctaatcatttctttctcaccatggtcttgaagaaga |
12080780 |
T |
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| Q |
334 |
agtaaacccatgatatttgatgcattttcagggtccatgtttttgatccttgaaaacaccatcttagttgcttcataaccatccatgatt |
423 |
Q |
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| T |
12080779 |
agtaaacccattatttttgaagcattttcagggtccatgttttggatccttgaaaaaactatcttagtagcttcataaccatccatgatt |
12080690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 1989411 - 1989363
Alignment:
| Q |
331 |
agaagtaaacccatgatatttgatgcattttcagggtccatgtttttga |
379 |
Q |
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||||| ||||||||||| ||||| |||||||||||||| | |||||||| |
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| T |
1989411 |
agaagaaaacccatgatttttgaagcattttcagggtcaaagtttttga |
1989363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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