View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3749_low_4 (Length: 607)
Name: NF3749_low_4
Description: NF3749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3749_low_4 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 11 - 588
Target Start/End: Original strand, 207328 - 207910
Alignment:
| Q |
11 |
atcatcatggttttgaaactgatcagacatagacatagtagtagtagtagctccccaagaagggtttgggatggttagagaaggtggaaggttgaaacca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
207328 |
atcatcatggttttgaaactgatcagacatagacatagtagtagtagtagctccccaagaagggttagggatggttagagaaggtggaaggttgaaacca |
207427 |
T |
|
| Q |
111 |
ctactaagccttgaagaagttgatgaattttgccttgaaaggaaattaggtgaaggtgatggaggagttga---aggtgttggtggagagttattagaac |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
207428 |
ctactaagccttgaagaagttgatgaattttgccttgaaaggaaattaggtgatggtgatggagaagttgatgaaggtgttggtggagagttattagaac |
207527 |
T |
|
| Q |
208 |
aaggtaatcctaactcttttctagctttgaaaatcactgagtgaataagtgattcaggacttaatgctaatcttatcatttctttctcaccatgttcttt |
307 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
207528 |
aaggtagtcctaactcttttctagctttgaatatcactgagtgaataagtgattcaggacttaatgctaatcttatcatttctttctcaccatgttcttt |
207627 |
T |
|
| Q |
308 |
actaagaagtaaacccatgatatttgatgcattttcagggtccatgtttttgatccttgaaaacaccatcttagttgcttcataaccatccatgatttga |
407 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
207628 |
actaagaagcaaacccatgatatttgatgcattttcagggtccatgcttttgatccttgaaaacaccatcttagttgcttcataaccatccatgatttga |
207727 |
T |
|
| Q |
408 |
tttgtttcaagaagaag--aagnnnnnnnctagtctactctatccttaatagaaaacaaaaatataaattttatgtttctttctcactcctattacaagt |
505 |
Q |
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||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
207728 |
tttgtttcaagaagaaggaaaaagaaaaacaagtctactctatccttaatagaaaacaaaaatataaattttatgtttctttctcactcctattagaagt |
207827 |
T |
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| Q |
506 |
aaagtttctttctcaaccacaaataagccctacctaccaagttaaaatgagtatgtttctttctttcacaaattcctgcaaag |
588 |
Q |
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| T |
207828 |
aaagtttctttctcaaccacaaataagccctacctaccaagttaaaatgagtatgtttctttctttcacaaattcctgcaaag |
207910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 11 - 588
Target Start/End: Complemental strand, 14610049 - 14609467
Alignment:
| Q |
11 |
atcatcatggttttgaaactgatcagacatagacatagtagtagtagtagctccccaagaagggtttgggatggttagagaaggtggaaggttgaaacca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14610049 |
atcatcatggttttgaaactgatcagacatagacatagtagtagtagtagctccccaagaagggttagggatggttagagaaggtggaaggttgaaacca |
14609950 |
T |
|
| Q |
111 |
ctactaagccttgaagaagttgatgaattttgccttgaaaggaaattaggtgaaggtgatggaggagttga---aggtgttggtggagagttattagaac |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
14609949 |
ctactaagccttgaagaagttgatgaattttgccttgaaaggaaattaggtgatggtgatggagaagttgatgaaggtgttggtggagagttattagaac |
14609850 |
T |
|
| Q |
208 |
aaggtaatcctaactcttttctagctttgaaaatcactgagtgaataagtgattcaggacttaatgctaatcttatcatttctttctcaccatgttcttt |
307 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14609849 |
aaggtagtcctaactcttttctagctttgaatatcactgagtgaataagtgattcaggacttaatgctaatcttatcatttctttctcaccatgttcttt |
14609750 |
T |
|
| Q |
308 |
actaagaagtaaacccatgatatttgatgcattttcagggtccatgtttttgatccttgaaaacaccatcttagttgcttcataaccatccatgatttga |
407 |
Q |
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| T |
14609749 |
actaagaagcaaacccatgatatttgatgcattttcagggtccatgcttttgatccttgaaaacaccatcttagttgcttcataaccatccatgatttga |
14609650 |
T |
|
| Q |
408 |
tttgtttcaagaagaag--aagnnnnnnnctagtctactctatccttaatagaaaacaaaaatataaattttatgtttctttctcactcctattacaagt |
505 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14609649 |
tttgtttcaagaagaaggaaaaagaaaaacaagtctactctatccttaatagaaaacaaaaatataaattttatgtttctttctcactcctattagaagt |
14609550 |
T |
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| Q |
506 |
aaagtttctttctcaaccacaaataagccctacctaccaagttaaaatgagtatgtttctttctttcacaaattcctgcaaag |
588 |
Q |
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| T |
14609549 |
aaagtttctttctcaaccacaaataagccctacctaccaagttaaaatgagtatgtttctttctttcacaaattcctgcaaag |
14609467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 215 - 404
Target Start/End: Complemental strand, 12080879 - 12080690
Alignment:
| Q |
215 |
tcctaactcttttctagctttgaaaatcactgagtgaataagtgattcaggacttaatgctaatcttatcatttctttctcaccatgttctttactaaga |
314 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||| |||||||||||| || ||||| || |||||||||||||||||||| |||| | |||| |
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| T |
12080879 |
tcctaactcatttctagctttgaaaatcactgaatgaagaagtgattcaggtacaaaagctaacctaatcatttctttctcaccatggtcttgaagaaga |
12080780 |
T |
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| Q |
315 |
agtaaacccatgatatttgatgcattttcagggtccatgtttttgatccttgaaaacaccatcttagttgcttcataaccatccatgatt |
404 |
Q |
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||||||||||| || ||||| |||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||| |
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| T |
12080779 |
agtaaacccattatttttgaagcattttcagggtccatgttttggatccttgaaaaaactatcttagtagcttcataaccatccatgatt |
12080690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 1989411 - 1989363
Alignment:
| Q |
312 |
agaagtaaacccatgatatttgatgcattttcagggtccatgtttttga |
360 |
Q |
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||||| ||||||||||| ||||| |||||||||||||| | |||||||| |
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| T |
1989411 |
agaagaaaacccatgatttttgaagcattttcagggtcaaagtttttga |
1989363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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