View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3749_low_9 (Length: 400)
Name: NF3749_low_9
Description: NF3749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3749_low_9 |
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| [»] scaffold0088 (1 HSPs) |
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Alignment Details
Target: scaffold0088 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 49381 - 49705
Alignment:
| Q |
18 |
aatagatgtggattgtcttgatcatgattacgctagagaagagtctttacatgaatcaagggcactttctttacaagatgttctcaatattcttcaaaat |
117 |
Q |
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| T |
49381 |
aatagatgtggattgtcttgatcatgattacgctagagaagtgtctttacatgaatcaagggcactttctttacaagatgttctcaatattcttcaaaat |
49480 |
T |
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| Q |
118 |
ctcgaaggtgatatcgttggtggagatgttgtcgagtacaacccacaacatgatgatactgattataagaagattgcccgggttactgctaaactgatca |
217 |
Q |
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| T |
49481 |
ctcgaaggtgatatcgttggtggagatgttgtcgagtacaacccacaacatgatgatactaattataagacgactgcccgggttactgctaaactgatca |
49580 |
T |
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| Q |
218 |
aagaattagctgcaaaaatgtccaaatgatgaatccatctctgaactgccatctgctatttgaattattgcgttctttttaattttaatctgtgtcgact |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
49581 |
aagaattagcggcaaaaatgtccaaatgatgaatccatctctgaactgccatctgctatttgaattattgcgttctttttaattttgttttgtgtcgact |
49680 |
T |
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| Q |
318 |
atggcgatacttaaaataaggagca |
342 |
Q |
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| T |
49681 |
atggcgatacttaaaatacggagca |
49705 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 8482122 - 8482049
Alignment:
| Q |
98 |
ttctcaatattcttcaaaatctcgaaggtgatatcgttggtggagatgttgtcgagtacaacccacaacatgat |
171 |
Q |
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| T |
8482122 |
ttctcaatatccttcaaaatcttcaaggtgatattgttggtggagatgtggttgaatacaatccacaacgtgat |
8482049 |
T |
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