View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3750_high_2 (Length: 309)

Name: NF3750_high_2
Description: NF3750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3750_high_2
NF3750_high_2
[»] chr8 (5 HSPs)
chr8 (1-309)||(446969-447277)
chr8 (225-284)||(5071040-5071099)
chr8 (220-259)||(2699269-2699308)
chr8 (200-255)||(34213577-34213632)
chr8 (220-252)||(6875328-6875360)
[»] chr2 (6 HSPs)
chr2 (225-298)||(3102617-3102690)
chr2 (156-186)||(1493517-1493547)
chr2 (159-188)||(5365584-5365613)
chr2 (157-194)||(9875470-9875507)
chr2 (220-261)||(36863693-36863734)
chr2 (159-192)||(44443351-44443384)
[»] chr1 (4 HSPs)
chr1 (224-284)||(15488892-15488952)
chr1 (220-254)||(45107590-45107624)
chr1 (222-259)||(5150900-5150937)
chr1 (157-186)||(34290272-34290301)
[»] chr6 (3 HSPs)
chr6 (200-255)||(12757521-12757576)
chr6 (200-255)||(14656293-14656348)
chr6 (157-186)||(31420981-31421010)
[»] chr5 (4 HSPs)
chr5 (220-259)||(39750106-39750145)
chr5 (222-259)||(37063144-37063181)
chr5 (160-188)||(1465028-1465056)
chr5 (158-206)||(28301357-28301405)
[»] chr7 (2 HSPs)
chr7 (225-286)||(3501039-3501100)
chr7 (139-188)||(24967095-24967144)
[»] chr4 (4 HSPs)
chr4 (157-186)||(25332811-25332840)
chr4 (159-191)||(24747350-24747382)
chr4 (159-235)||(43824270-43824346)
chr4 (95-183)||(46110242-46110330)


Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 447277 - 446969
Alignment:
Q  1 caagtatttatgccccgtcgataaacaaaactaagtctatcaaaccatatccatagctattccccatgcttttaattttttgaccacgtatccgtttgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  447277 caagtatttatgccccgtcgataaacaaaactaagtctatcaaaccatatccataactattccccatgcttttaattttttgaccacgtatccgtttgga 447178  T
Q  101 ttgacttatttgaatttagctattagcatacgatcttgtggaaataacttataatctattcataagttgttttcagcttattttcacatgctttttagaa 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  447177 ttgacttatttgaatttagctattagcatacgattttgtggaaacaacttataatctatttataagttgttttcagcttattttcacgtgctttttagaa 447078  T
Q  201 taacttgcgaaaatgacacataacttatatgaaaatggtttgactttattttatattttaccataaaaccaacttatacataagcagatatataataagc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  447077 taacttgcgaaaatgacacataacttatatgaaaatggtttgactttattttatattttaccgtaaaaccaacttatacataagcagatatataataagc 446978  T
Q  301 acttataat 309  Q
    |||||||||    
T  446977 acttataat 446969  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 5071040 - 5071099
Alignment:
Q  225 ttatatgaaaatggtttgactttattttatattttaccataaaaccaacttatacataag 284  Q
    |||||||||||  |||||||||||||||||||||||| ||| || |||||||||||||||    
T  5071040 ttatatgaaaaaagtttgactttattttatattttactatagaaacaacttatacataag 5071099  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 2699308 - 2699269
Alignment:
Q  220 ataacttatatgaaaatggtttgactttattttatatttt 259  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  2699308 ataacttatatgaaaatagtttaactttattttatatttt 2699269  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 34213577 - 34213632
Alignment:
Q  200 ataacttgcgaaaatgacacataacttatatgaaaatggtttgactttattttata 255  Q
    ||||||| ||||||  || |||||||||||||||| | ||||||||||||||||||    
T  34213577 ataacttacgaaaacaactcataacttatatgaaagtagtttgactttattttata 34213632  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 6875328 - 6875360
Alignment:
Q  220 ataacttatatgaaaatggtttgactttatttt 252  Q
    ||||||||||||||||| |||||||||||||||    
T  6875328 ataacttatatgaaaatagtttgactttatttt 6875360  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 3102690 - 3102617
Alignment:
Q  225 ttatatgaaaatggtttgactttattttatattttaccataaaaccaacttatacataagcagatatataataa 298  Q
    |||||| ||||| |||||||||||||||||||||| | ||||||  | ||||||||||||||| ||||| ||||    
T  3102690 ttatataaaaatagtttgactttattttatattttgctataaaaatagcttatacataagcagttatatgataa 3102617  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 186
Target Start/End: Original strand, 1493517 - 1493547
Alignment:
Q  156 ctattcataagttgttttcagcttattttca 186  Q
    |||||||||||||||||||||||||||||||    
T  1493517 ctattcataagttgttttcagcttattttca 1493547  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 188
Target Start/End: Original strand, 5365584 - 5365613
Alignment:
Q  159 ttcataagttgttttcagcttattttcaca 188  Q
    ||||||||||||||||||||||||||||||    
T  5365584 ttcataagttgttttcagcttattttcaca 5365613  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 9875470 - 9875507
Alignment:
Q  157 tattcataagttgttttcagcttattttcacatgcttt 194  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  9875470 tattcataagctgttttcagcttattttcacaagcttt 9875507  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 36863693 - 36863734
Alignment:
Q  220 ataacttatatgaaaatggtttgactttattttatattttac 261  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||    
T  36863693 ataacttatataaaaattgtttgactttattttatcttttac 36863734  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 44443384 - 44443351
Alignment:
Q  159 ttcataagttgttttcagcttattttcacatgct 192  Q
    |||||||||||||||||||||||||||| |||||    
T  44443384 ttcataagttgttttcagcttattttcatatgct 44443351  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 15488952 - 15488892
Alignment:
Q  224 cttatatgaaaatggtttgactttattttatattttaccataaaaccaacttatacataag 284  Q
    ||||||| ||||| |||||||||||| |||| ||||| |||| || |||||||||||||||    
T  15488952 cttatataaaaatagtttgactttatgttatcttttatcatagaaacaacttatacataag 15488892  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 45107624 - 45107590
Alignment:
Q  220 ataacttatatgaaaatggtttgactttattttat 254  Q
    ||||||||||||||||| |||||||||||||||||    
T  45107624 ataacttatatgaaaatagtttgactttattttat 45107590  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 5150937 - 5150900
Alignment:
Q  222 aacttatatgaaaatggtttgactttattttatatttt 259  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  5150937 aacttaaatgaaaatagtttgactttattttatatttt 5150900  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 34290301 - 34290272
Alignment:
Q  157 tattcataagttgttttcagcttattttca 186  Q
    ||||||||||||||||||||||||||||||    
T  34290301 tattcataagttgttttcagcttattttca 34290272  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 12757576 - 12757521
Alignment:
Q  200 ataacttgcgaaaatgacacataacttatatgaaaatggtttgactttattttata 255  Q
    ||||||| ||||||  || |||||||||||||||| | ||||||||||||||||||    
T  12757576 ataacttacgaaaacaactcataacttatatgaaagtagtttgactttattttata 12757521  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 14656293 - 14656348
Alignment:
Q  200 ataacttgcgaaaatgacacataacttatatgaaaatggtttgactttattttata 255  Q
    ||||||| ||||||  || |||||||||||||||| | ||||||||||||||||||    
T  14656293 ataacttacgaaaacaactcataacttatatgaaagtagtttgactttattttata 14656348  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 31421010 - 31420981
Alignment:
Q  157 tattcataagttgttttcagcttattttca 186  Q
    ||||||||||||||||||||||||||||||    
T  31421010 tattcataagttgttttcagcttattttca 31420981  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 39750145 - 39750106
Alignment:
Q  220 ataacttatatgaaaatggtttgactttattttatatttt 259  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  39750145 ataacttatatgaaaatagtttgactttattttatctttt 39750106  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 37063144 - 37063181
Alignment:
Q  222 aacttatatgaaaatggtttgactttattttatatttt 259  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  37063144 aacttatatgaaaatagtttgactttattttatctttt 37063181  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 1465028 - 1465056
Alignment:
Q  160 tcataagttgttttcagcttattttcaca 188  Q
    |||||||||||||||||||||||||||||    
T  1465028 tcataagttgttttcagcttattttcaca 1465056  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 28301405 - 28301357
Alignment:
Q  158 attcataagttgttttcagcttattttcacatgctttttagaataactt 206  Q
    |||| |||| ||||||||||||||||||||| | |||||| ||||||||    
T  28301405 attcgtaagctgttttcagcttattttcacaagttttttacaataactt 28301357  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 3501039 - 3501100
Alignment:
Q  225 ttatatgaaaatggtttgactttattttatattttaccataaaaccaacttatacataagca 286  Q
    ||||||||||||| |||||||||||||||| |||||  ||| ||  | ||||||||||||||    
T  3501039 ttatatgaaaatgatttgactttattttatcttttattatataattagcttatacataagca 3501100  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 24967144 - 24967095
Alignment:
Q  139 tggaaataacttataatctattcataagttgttttcagcttattttcaca 188  Q
    |||||| |||||||||  ||| || |||||||||||||||||||||||||    
T  24967144 tggaaacaacttataacatatccagaagttgttttcagcttattttcaca 24967095  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 25332840 - 25332811
Alignment:
Q  157 tattcataagttgttttcagcttattttca 186  Q
    ||||||||||||||||||||||||||||||    
T  25332840 tattcataagttgttttcagcttattttca 25332811  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 24747382 - 24747350
Alignment:
Q  159 ttcataagttgttttcagcttattttcacatgc 191  Q
    |||||||||||||||||||||||||||| ||||    
T  24747382 ttcataagttgttttcagcttattttcatatgc 24747350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 43824346 - 43824270
Alignment:
Q  159 ttcataagttgttttcagcttattttcacatgctttttagaataacttgcgaaaatgacacataacttatatgaaaa 235  Q
    ||||||||||||||||||||||||| || | |||||  || ||||||| ||||||   |  ||||||||||||||||    
T  43824346 ttcataagttgttttcagcttatttccataagctttccaggataacttacgaaaaaagcttataacttatatgaaaa 43824270  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 46110330 - 46110242
Alignment:
Q  95 tttggattgacttatttgaatttagctattagcatacgatcttgtggaaataacttataatctattcataagttgttttcagcttattt 183  Q
    |||| |||||||  ||||| |||| ||| ||||||| |  ||| || ||| ||||||| || || ||||||||||||||||||||||||    
T  46110330 tttgaattgactagtttgagtttatctactagcataggcacttatgaaaacaacttatgatatactcataagttgttttcagcttattt 46110242  T

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