View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3751_high_1 (Length: 596)

Name: NF3751_high_1
Description: NF3751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3751_high_1
NF3751_high_1
[»] chr3 (2 HSPs)
chr3 (1-577)||(26452907-26453495)
chr3 (1-47)||(26452805-26452851)
[»] chr4 (9 HSPs)
chr4 (70-213)||(23676325-23676469)
chr4 (5-68)||(21538951-21539014)
chr4 (12-52)||(3703584-3703624)
chr4 (5-52)||(5979806-5979853)
chr4 (11-53)||(12329026-12329068)
chr4 (12-58)||(21538844-21538890)
chr4 (10-52)||(25812263-25812305)
chr4 (26-63)||(2605367-2605404)
chr4 (12-53)||(53860895-53860936)
[»] chr1 (4 HSPs)
chr1 (316-577)||(47680325-47680588)
chr1 (10-69)||(49632935-49632995)
chr1 (12-46)||(11985458-11985492)
chr1 (11-63)||(30018687-30018740)
[»] scaffold0110 (2 HSPs)
scaffold0110 (10-68)||(11425-11483)
scaffold0110 (10-68)||(19162-19220)
[»] chr8 (3 HSPs)
chr8 (491-576)||(33948416-33948501)
chr8 (11-59)||(9040955-9041003)
chr8 (9-68)||(25939281-25939340)
[»] chr5 (9 HSPs)
chr5 (11-63)||(10818875-10818927)
chr5 (9-68)||(10818787-10818845)
chr5 (4-49)||(4639521-4639566)
chr5 (9-68)||(14613533-14613592)
chr5 (12-65)||(4192001-4192054)
chr5 (508-576)||(2210309-2210377)
chr5 (11-63)||(8367019-8367071)
chr5 (307-335)||(11727230-11727258)
chr5 (12-52)||(35924595-35924635)
[»] chr6 (2 HSPs)
chr6 (12-59)||(13613749-13613796)
chr6 (5-46)||(30351451-30351492)
[»] chr7 (2 HSPs)
chr7 (19-63)||(36390712-36390756)
chr7 (15-47)||(39933632-39933664)
[»] chr2 (2 HSPs)
chr2 (11-59)||(37096596-37096644)
chr2 (5-63)||(13793669-13793727)


Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 26452907 - 26453495
Alignment:
Q  1 ttgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctcgctttatttttgtcctactgggctttgtgtgc 100  Q
    ||||||| || ||||||||||||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26452907 ttgctggagtatttttggtcattttcatgtgtttctaggaaataatggatgtccaaaaaacaattctcgctttatttttgtcctactgggctttgtgtgc 26453006  T
Q  101 tgttgtctcccatcactgacttaagggtaaatgctcacggaccctgtgaattgttaaaatttcacatggggtgagaaaaacaagcattgaatcctataat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453007 tgttgtctcccatcactgacttaagggtaaatgctcacggaccccgtgaattgttaaaatttcacatggggtgagaaaaacaagcattgaatcctataat 26453106  T
Q  201 atggtccaactttaaagnnnnnnnnttgtttagcagaagttacgatctgataggctgagcaatggaaaggggtgtgccgatcaatcttagagcttctaaa 300  Q
    |||||||||||||||||        ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  26453107 atggtccaactttaaagaaaaaaaattgtttagcagaagttacgatctgataggctgaacaatggaaaggggtgtgccgatcaatcttggagcttctaaa 26453206  T
Q  301 gcactggaacaaattttttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaaccactgaannnnnnnctccaatgctagaac 400  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  26453207 gcactggaacaaatattttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaaccactgaatttttttctccaatgctagaac 26453306  T
Q  401 tc------------attttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctcactgcttttcttaccttttctgtac 488  Q
    ||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26453307 tcaacacacttcctattttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctctctgcttttcttaccttttctgtac 26453406  T
Q  489 tttttctaatgcagtcagtgctagaacatgttctagtgggagaatttttctccacagggtcatccagctcgttgatctccaatacataa 577  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26453407 tttttctaatgcagtcagtgctagaacatgttctagtgggagaattgttctccacagggtcatccagctcgttgatctccaatacataa 26453495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26452851 - 26452805
Alignment:
Q  1 ttgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26452851 ttgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 26452805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 70 - 213
Target Start/End: Complemental strand, 23676469 - 23676325
Alignment:
Q  70 ctttatttttgtcctactgggctttgtgtgctgttgtctcccatcactgacttaagggtaaatgctcacggaccctgtgaattg-ttaaaatttcacatg 168  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| | |||||||||||||||||||  ||||||| |||||||||||||||    
T  23676469 ctttatttttgtcctactgggatttctgtgctggtgtctcccatcactgacttgacggtaaatgctcacggaccccttgaattgcttaaaatttcacatg 23676370  T
Q  169 gggtgagaaaaacaagcattgaatcctataatatggtccaacttt 213  Q
    | |||||||||||||||||||||||||| ||| | ||||| ||||    
T  23676369 gagtgagaaaaacaagcattgaatcctagaatttagtccaccttt 23676325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 21538951 - 21539014
Alignment:
Q  5 tggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 68  Q
    |||||||||||||||||||| | ||||||||||| ||||| |||| ||  ||||||||||||||    
T  21538951 tggggtgtttttggtcatttccttgtgtttctaggaaacattgaaagtttaaaaagcaattctc 21539014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 3703624 - 3703584
Alignment:
Q  12 tttttggtcattttcatgtgtttctagaaaacaatgaatgt 52  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  3703624 tttttggtcattttcatgtgtttctaaaaaacaatggatgt 3703584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 5979806 - 5979853
Alignment:
Q  5 tggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 52  Q
    |||||||||||||||||||| ||| ||||||||  |||||||||||||    
T  5979806 tggggtgtttttggtcatttccatttgtttctaagaaacaatgaatgt 5979853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 12329026 - 12329068
Alignment:
Q  11 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtc 53  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||    
T  12329026 gtttttgatcattttcatgtgtttctaaaaaacaatggatgtc 12329068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 21538890 - 21538844
Alignment:
Q  12 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaa 58  Q
    |||||||| |||| |||||||||||||||||||||| ||||| ||||    
T  21538890 tttttggttatttccatgtgtttctagaaaacaatggatgtcaaaaa 21538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 25812305 - 25812263
Alignment:
Q  10 tgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 52  Q
    |||||||| |||||| |||||||||||||||||||||| ||||    
T  25812305 tgtttttgatcatttccatgtgtttctagaaaacaatggatgt 25812263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 2605404 - 2605367
Alignment:
Q  26 catgtgtttctagaaaacaatgaatgtccaaaaagcaa 63  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  2605404 catgtgtttctaggaaacaatgaatgtcaaaaaagcaa 2605367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 53860895 - 53860936
Alignment:
Q  12 tttttggtcattttcatgtgtttctagaaaacaatgaatgtc 53  Q
    ||||||||||||| ||||||||||||| |||||||| |||||    
T  53860895 tttttggtcatttccatgtgtttctaggaaacaatggatgtc 53860936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 316 - 577
Target Start/End: Complemental strand, 47680588 - 47680325
Alignment:
Q  316 ttttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaaccactga-annnnnnnctccaatgctagaactc------------ 402  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||         |||||||||||||||||                
T  47680588 ttttgttcttagctgctaaatattgggtccaagtatgccatgtaggatttaacaaccattgagttttttttctccaatgctagaactcaacacactttct 47680489  T
Q  403 attttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctcactgcttttcttaccttttctgtactttttctaatgcag 502  Q
    |||||||||||||||||  |||| | |||||||||| ||  |||| ||||||||||||||| |  ||| |||           |||||||||| ||||||    
T  47680488 attttactttatgtaggaccctcgtgtttcttctcttatcatccattatacctcttctctctccccttctct-----------tactttttctgatgcag 47680400  T
Q  503 tcagtgctagaacatgttctagtgggagaatttttctccacagggtcatccagctcgttgatctccaatacataa 577  Q
      | ||||||||| ||||||| |||||||| | |||||||||  |||||||||||| |||||||||||| |||||    
T  47680399 caactgctagaacgtgttctaatgggagaactgttctccacaatgtcatccagctcattgatctccaatgcataa 47680325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 49632935 - 49632995
Alignment:
Q  10 tgtttttggtcattttcatgtgtttctagaaaacaatgaatgtc-caaaaagcaattctcg 69  Q
    ||||||||||||||| |||||||||||||||| ||||| |||||  |||||||||||||||    
T  49632935 tgtttttggtcatttccatgtgtttctagaaatcaatggatgtcaaaaaaagcaattctcg 49632995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 11985492 - 11985458
Alignment:
Q  12 tttttggtcattttcatgtgtttctagaaaacaat 46  Q
    |||||||||||||||||||||||||||||||||||    
T  11985492 tttttggtcattttcatgtgtttctagaaaacaat 11985458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 30018687 - 30018740
Alignment:
Q  11 gtttttggtcattttcatgtg-tttctagaaaacaatgaatgtccaaaaagcaa 63  Q
    |||||||||||||| |||||| ||||||| |||||||| ||||| |||||||||    
T  30018687 gtttttggtcatttccatgtgttttctaggaaacaatggatgtcaaaaaagcaa 30018740  T

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Target: scaffold0110 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 11483 - 11425
Alignment:
Q  10 tgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 68  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||    
T  11483 tgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaattctc 11425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 19220 - 19162
Alignment:
Q  10 tgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 68  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||    
T  19220 tgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaattctc 19162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 491 - 576
Target Start/End: Complemental strand, 33948501 - 33948416
Alignment:
Q  491 tttctaatgcagtcagtgctagaacatgttctagtgggagaatttttctccacagggtcatccagctcgttgatctccaatacata 576  Q
    ||||| |||||| || ||||| ||| ||||||||||| | || | |||||||||| |||||||| ||| |||||||||||||||||    
T  33948501 tttctgatgcagccactgctataacgtgttctagtggaataactattctccacagtgtcatccacctcattgatctccaatacata 33948416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 9040955 - 9041003
Alignment:
Q  11 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 59  Q
    |||||| ||||||| ||||||||||||| |||||||||||||| |||||    
T  9040955 gtttttagtcatttccatgtgtttctaggaaacaatgaatgtcaaaaaa 9041003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 25939340 - 25939281
Alignment:
Q  9 gtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 68  Q
    |||||||||||| ||| ||| ||||||||| ||||||||||| | |||||| ||||||||    
T  25939340 gtgtttttggtcttttccatatgtttctaggaaacaatgaatattcaaaaaacaattctc 25939281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 10818875 - 10818927
Alignment:
Q  11 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 63  Q
    |||||||||||||| ||||||||| |||||||||||| ||||| |||||||||    
T  10818875 gtttttggtcatttccatgtgtttttagaaaacaatggatgtcaaaaaagcaa 10818927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 10818845 - 10818787
Alignment:
Q  9 gtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 68  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||  ||||||||||||||    
T  10818845 gtgtttttggtaattttaatgtgtttctagaaaacaatg-atgttaaaaaagcaattctc 10818787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 4639521 - 4639566
Alignment:
Q  4 ctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaa 49  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||    
T  4639521 ctggggtgtttttgatcattttcatgtgtttctaagaaacaatgaa 4639566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 14613592 - 14613533
Alignment:
Q  9 gtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 68  Q
    ||||||||||| |||||||||||||||||| |||||||| |||    |||||||||||||    
T  14613592 gtgtttttggttattttcatgtgtttctaggaaacaatggatgcgagaaaagcaattctc 14613533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 4192001 - 4192054
Alignment:
Q  12 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaatt 65  Q
    ||||||||||||||||||||||| ||| |||||||| ||||  ||| |||||||    
T  4192001 tttttggtcattttcatgtgtttgtaggaaacaatggatgtgtaaacagcaatt 4192054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 576
Target Start/End: Original strand, 2210309 - 2210377
Alignment:
Q  508 gctagaacatgttctagtgggagaatttttctccacagggtcatccagctcgttgatctccaatacata 576  Q
    |||| ||| |||||||||||||||| | ||||| |||| |||||||| ||  |||||||||||| ||||    
T  2210309 gctaaaacgtgttctagtgggagaactgttctctacagtgtcatccaccttattgatctccaatgcata 2210377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 8367071 - 8367019
Alignment:
Q  11 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 63  Q
    ||||||||||||||  ||| |||||||| |||||||| ||||| |||||||||    
T  8367071 gtttttggtcatttctatgggtttctaggaaacaatggatgtcaaaaaagcaa 8367019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 11727230 - 11727258
Alignment:
Q  307 gaacaaattttttgttcttagctgctaaa 335  Q
    |||||||||||||||||||||||||||||    
T  11727230 gaacaaattttttgttcttagctgctaaa 11727258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 35924635 - 35924595
Alignment:
Q  12 tttttggtcattttcatgtgtttctagaaaacaatgaatgt 52  Q
    ||||||||||||||||||| ||||||||||| |||| ||||    
T  35924635 tttttggtcattttcatgtttttctagaaaataatggatgt 35924595  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 13613796 - 13613749
Alignment:
Q  12 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 59  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||    
T  13613796 tttttggtcattttcatgtgtttctagaaaacaatagatgtcgaaaaa 13613749  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 30351492 - 30351451
Alignment:
Q  5 tggggtgtttttggtcattttcatgtgtttctagaaaacaat 46  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  30351492 tggggtgtttttggtcattttcatatgtttctaggaaacaat 30351451  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 36390756 - 36390712
Alignment:
Q  19 tcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 63  Q
    |||||||||||||||||||||||||| | |||||| |||||||||    
T  36390756 tcattttcatgtgtttctagaaaacactaaatgtcaaaaaagcaa 36390712  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 39933632 - 39933664
Alignment:
Q  15 ttggtcattttcatgtgtttctagaaaacaatg 47  Q
    |||||||||||||||||||||||||||| ||||    
T  39933632 ttggtcattttcatgtgtttctagaaaataatg 39933664  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 37096644 - 37096596
Alignment:
Q  11 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 59  Q
    ||||||| |||||| |||||||||||||||||||||||| ||| |||||    
T  37096644 gtttttgatcatttccatgtgtttctagaaaacaatgaaggtcaaaaaa 37096596  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 13793727 - 13793669
Alignment:
Q  5 tggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 63  Q
    ||||||||||||||||||| |||| ||||||||  |||||||| ||||| ||| |||||    
T  13793727 tggggtgtttttggtcattctcatatgtttctaagaaacaatggatgtcaaaacagcaa 13793669  T

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