View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3751_high_3 (Length: 461)
Name: NF3751_high_3
Description: NF3751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3751_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 45512491 - 45512944
Alignment:
| Q |
1 |
caatgttactagacatgttgtcaaacttgatctcatgaatccttgtcaccaaccatcttggtcgcgagaagaagaacattttggtcactactattt---- |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45512491 |
caatgttactagacatgttgtcaaacttgatctcatgaatccttgtcaccaaccattttggtcgcgagaagaagaacattttggtcactactatttgtac |
45512590 |
T |
|
| Q |
97 |
-----ggacgattacatgccttgttcaccaatagttgctccaaatgtgagctcatctttgttgcaattggaacacttgacttatttggacttgtctagaa |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45512591 |
aatttggacgattacatgccttgttcaccaatagttgctccaaatgtgagctcatctttgttgcaattggaacacttgacttatttggacttgtctggaa |
45512690 |
T |
|
| Q |
192 |
ataatttcagtgggagtccaattcctatgttcttgggttccatgggacgccttgagtatctctctctgtctcatgctcgtcttagcgggaggattcccaa |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45512691 |
ataatttcagtgggagtccaattcctatgttcttgggttccatgggacgccttgagtatctctctctgtctcatgctcgtcttagcgggaggattcccaa |
45512790 |
T |
|
| Q |
292 |
cagtctcagaaatctcaagaacctacaattccttgatctcagcttcaattactattaccttacgcaatttgaagagagagaattacaaatggatgacgac |
391 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45512791 |
cagtctcagaaatctcaagaacctacgattccttgatctcagcttcaattactattaccttacgcaatttgaagagagagaattacaaatggatgacggc |
45512890 |
T |
|
| Q |
392 |
accagttggatttcaaaccttcactcactcaaacaccttgacttgagtggtatt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45512891 |
accagttggatttcaaaccttcactcactcaaacaccttgacttgagtggtatt |
45512944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 132 - 263
Target Start/End: Complemental strand, 22848928 - 22848797
Alignment:
| Q |
132 |
caaatgtgagctcatctttgttgcaattggaacacttgacttatttggacttgtctagaaataatttcagtgggagtccaattcctatgttcttgggttc |
231 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| |||||||||||||||||||| || ||||| |||||| | ||||||||||||||||||| | ||||| |
|
|
| T |
22848928 |
caaatctgagctcatctttgttgcacttggaatacttgacttatttggacttgactggaaatgatttcaatttgagtccaattcctatgttcgtaggttc |
22848829 |
T |
|
| Q |
232 |
catgggacgccttgagtatctctctctgtctc |
263 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| |
|
|
| T |
22848828 |
catgggacgtcttgagtatctctctctctctc |
22848797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University