View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3751_high_4 (Length: 431)
Name: NF3751_high_4
Description: NF3751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3751_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 14179007 - 14179405
Alignment:
| Q |
16 |
gtttcttccaagttaatatgttatctttctctctttttgtgggtttatgnnnnnnnnnnnnttgtcatgtcatgacatgtacatgaagtgaagttattgg |
115 |
Q |
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| T |
14179007 |
gtttctttcaagttaatatgttatctttctctctttttgtgggtttatggagagagagagattgttatgtcatgacatgtacatgaagtgaagttattgg |
14179106 |
T |
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| Q |
116 |
tctctttcattcgatcaaactaaggttgaccaacttgagtgtgttagtctcttagacaaggacagttagtttatttttcagatgatgatgcaagctgata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14179107 |
tctctttcattcgatcaaactaaggttgaccaacttgagtgtgttagtctcttagacaaggacagttagtttatttttcagatgatgatgcaagctgata |
14179206 |
T |
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| Q |
216 |
ttacaaatatgtatatgatgatttcatgttataattcgtttttcagacagcatgtgctggagattatgcatttcactttcaacgatatatatatgtagat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14179207 |
ttacaaatatgtatatgatgatttcatgttataattcgtttttcagacagcatgtgctggagattatgcatttcactttcaacgatatatttatgtagat |
14179306 |
T |
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| Q |
316 |
agataatgaatatgaatacaatttcagctttgctataaagatttttatagggctacatcttataaaatcaaattacagctgtctcttgctgcttcaatt |
414 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14179307 |
aaataatgaatatgaatacaatttcagctttgctataaagatttttatagggctacatcttataaaatcaaattacagctgtctcttgctgcttcaatt |
14179405 |
T |
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