View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3751_low_12 (Length: 238)

Name: NF3751_low_12
Description: NF3751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3751_low_12
NF3751_low_12
[»] chr4 (10 HSPs)
chr4 (17-216)||(46738569-46738771)
chr4 (17-202)||(19894134-19894320)
chr4 (17-202)||(22555625-22555812)
chr4 (81-202)||(11324589-11324710)
chr4 (26-202)||(24143793-24143971)
chr4 (48-202)||(23541926-23542080)
chr4 (82-202)||(15687020-15687141)
chr4 (116-202)||(25353955-25354041)
chr4 (26-155)||(11905749-11905880)
chr4 (125-202)||(31971698-31971774)
[»] chr5 (8 HSPs)
chr5 (17-202)||(34404754-34404940)
chr5 (17-202)||(26182555-26182741)
chr5 (27-202)||(17920109-17920285)
chr5 (26-202)||(20497472-20497650)
chr5 (81-202)||(7897237-7897357)
chr5 (26-202)||(20287221-20287399)
chr5 (128-202)||(17660763-17660836)
chr5 (125-202)||(20740282-20740358)
[»] chr7 (13 HSPs)
chr7 (17-202)||(12560535-12560721)
chr7 (17-202)||(30226720-30226906)
chr7 (82-202)||(3285622-3285742)
chr7 (17-202)||(48796942-48797126)
chr7 (17-202)||(14976084-14976268)
chr7 (17-202)||(15405560-15405744)
chr7 (81-200)||(7620798-7620917)
chr7 (26-202)||(11559824-11560002)
chr7 (83-202)||(11629358-11629464)
chr7 (112-173)||(4541991-4542052)
chr7 (127-202)||(42783537-42783612)
chr7 (125-173)||(9567674-9567722)
chr7 (127-202)||(4793897-4793971)
[»] chr1 (7 HSPs)
chr1 (26-202)||(11084980-11085158)
chr1 (17-202)||(33063037-33063223)
chr1 (26-202)||(45598651-45598829)
chr1 (80-202)||(52436137-52436259)
chr1 (87-202)||(40312544-40312659)
chr1 (116-202)||(17038982-17039068)
chr1 (112-173)||(8282691-8282752)
[»] chr8 (9 HSPs)
chr8 (81-202)||(8730647-8730768)
chr8 (26-202)||(37154846-37155022)
chr8 (81-202)||(17880059-17880180)
chr8 (48-202)||(39081590-39081744)
chr8 (82-201)||(18676508-18676626)
chr8 (48-202)||(33465482-33465635)
chr8 (17-202)||(17280539-17280725)
chr8 (82-200)||(22876735-22876853)
chr8 (112-169)||(23250488-23250545)
[»] chr6 (7 HSPs)
chr6 (26-202)||(16136901-16137079)
chr6 (17-202)||(19216606-19216792)
chr6 (84-202)||(20003803-20003921)
chr6 (48-202)||(9385298-9385452)
chr6 (81-202)||(15002481-15002602)
chr6 (48-202)||(32452671-32452825)
chr6 (128-202)||(12444067-12444141)
[»] chr3 (6 HSPs)
chr3 (26-202)||(8749699-8749877)
chr3 (26-202)||(9037365-9037543)
chr3 (81-202)||(9030742-9030863)
chr3 (126-202)||(11560812-11560888)
chr3 (125-173)||(7478512-7478560)
chr3 (125-173)||(13920287-13920335)
[»] chr2 (6 HSPs)
chr2 (83-202)||(18605917-18606036)
chr2 (81-202)||(18766395-18766516)
chr2 (48-202)||(29566696-29566850)
chr2 (89-202)||(13314286-13314399)
chr2 (129-211)||(20068788-20068870)
chr2 (112-202)||(27108214-27108303)
[»] scaffold0328 (1 HSPs)
scaffold0328 (26-202)||(16292-16470)
[»] scaffold0143 (1 HSPs)
scaffold0143 (48-202)||(36981-37135)
[»] scaffold0022 (1 HSPs)
scaffold0022 (128-202)||(3884-3958)
[»] scaffold0645 (1 HSPs)
scaffold0645 (126-202)||(1807-1883)
[»] scaffold0032 (1 HSPs)
scaffold0032 (89-201)||(103631-103744)
[»] scaffold0520 (2 HSPs)
scaffold0520 (112-202)||(5738-5827)
scaffold0520 (112-173)||(11993-12054)
[»] scaffold0064 (1 HSPs)
scaffold0064 (112-202)||(45267-45356)
[»] scaffold0034 (1 HSPs)
scaffold0034 (125-202)||(50209-50285)
[»] scaffold0480 (1 HSPs)
scaffold0480 (112-202)||(11951-12040)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 46738771 - 46738569
Alignment:
Q  17 cctgtgctaaaaaa-cacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaac 113  Q
    |||||||||||||| ||||||| ||||| ||   |||||||| ||||||||||||||||        | ||||||||||||| | ||| |||||||||||    
T  46738771 cctgtgctaaaaaaacacgcagtttgaccaacaagaataaagacgtgaattccttaaataaaaaagcgtgtgcgtaaaacaaagtaggatgcaggtcaac 46738672  T
Q  114 tgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcctaccgtagagt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  46738671 tgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaagtgaagacaatatacaaatatccaaccgtagagt 46738572  T
Q  214 aat 216  Q
    |||    
T  46738571 aat 46738569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 19894320 - 19894134
Alignment:
Q  17 cctgtgctaaaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaact 114  Q
    ||||||||||||| ||||||||||||| ||   ||||||||||||| |||||||||||        ||||| ||||||||||||||||||||||||||||    
T  19894320 cctgtgctaaaaa-cacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgtgtaaaacaaggcagggtgcaggtcaact 19894222  T
Q  115 gaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||    
T  19894221 gaatcatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaaaatcc 19894134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 22555625 - 22555812
Alignment:
Q  17 cctgtgctaaaaaacacgcagcttgacta--aggaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaact 114  Q
    ||||||||||||| ||||||||||||| |  | |||||||||||||||||||||||||        || |||||||||||||||||||||||||||||||    
T  22555625 cctgtgctaaaaa-cacgcagcttgaccatcaagaataaaggcgtgaattccttaaataaaattgcgcatgcgtaaaacaaggcagggtgcaggtcaact 22555723  T
Q  115 gaacca-tgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||| || || |||||||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  22555724 gaaccaatgccaagatgttggcacatcttgtacaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatcc 22555812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 11324710 - 11324589
Alignment:
Q  81 gcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaa 180  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||     
T  11324710 gcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgccaagatgttggcacatcttgtacaacatctcacatgaatatttgttttaggcaaaag 11324611  T
Q  181 tgaagacaatatacaaatatcc 202  Q
    ||||| ||||||||||||||||    
T  11324610 tgaagccaatatacaaatatcc 11324589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 24143793 - 24143971
Alignment:
Q  26 aaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgt 123  Q
    ||||||| |||||||||| ||   ||||||||||||| |||||||||||        ||||||| ||||| ||||| |||| |||||||||||||||||     
T  24143793 aaaaacatgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgaaaaactaggcaaggtgtaggtcaactgaaccatgc 24143892  T
Q  124 caggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| ||||||||||||||||    
T  24143893 caggatgttggcacatcgtgttcaacatctcatatgaatatttgttttaggcaaaagtgaagtcaatatacaaatatcc 24143971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 23541926 - 23542080
Alignment:
Q  48 gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttca 147  Q
    ||||||||||||| |||||||||||        ||||||| |||||||||||  || |||||||| ||||||||| || ||||||| |||||| ||||||    
T  23541926 gaataaaggcgtggattccttaaataaaataacgcgtgcgaaaaacaaggcaaagtacaggtcaattgaaccatgccatgatgttgacacatcttgttca 23542025  T
Q  148 acatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  23542026 acatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatcc 23542080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 15687141 - 15687020
Alignment:
Q  82 cgtgcgtaaaacaaggcagggtgcaggtca-actgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaa 180  Q
    |||||||||||||||||| ||| |||| || || |||||||| ||||||||||| ||||||||| ||||||| ||| ||||||||||||||||| ||||     
T  15687141 cgtgcgtaaaacaaggcaaggtacagggcataccgaaccatgccaggatgttggaacatcgtgtacaacatcacacttgaatatttgttttaggcaaaag 15687042  T
Q  181 tgaagacaatatacaaatatcc 202  Q
    ||||| ||| ||||||||||||    
T  15687041 tgaagccaacatacaaatatcc 15687020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 202
Target Start/End: Complemental strand, 25354041 - 25353955
Alignment:
Q  116 aaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||  ||||||| |||| ||||| ||||||||||||||||    
T  25354041 aaccatgcctggatgttggcacatcgtgttcaacatctcacatgaatattcattttaggcaaaagtgaaggcaatatacaaatatcc 25353955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 11905749 - 11905880
Alignment:
Q  26 aaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgt 123  Q
    |||| ||||||||||||| ||   |||| |||||||| |||||||||||        ||||| ||||||||||||| ||| | ||||||||||||||||     
T  11905749 aaaagcacgcagcttgaccaacaagaattaaggcgtggattccttaaataaataaacgcgtgtgtaaaacaaggcaaggtaccggtcaactgaaccatgc 11905848  T
Q  124 caggatgttggcacatcgtgttcaacatctca 155  Q
    ||||||||||| ||||||||| ||||||||||    
T  11905849 caggatgttggaacatcgtgtccaacatctca 11905880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 31971698 - 31971774
Alignment:
Q  125 aggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||||| ||||||| | ||||||| ||||||||||||| ||||| | |||| ||||| ||| | ||||||||||    
T  31971698 aggatgttggaacatcgtatacaacatcacacatgaatatttatttta-gcaaaagtgaagtcaacacacaaatatcc 31971774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 34404940 - 34404754
Alignment:
Q  17 cctgtgctaaaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaact 114  Q
    ||||||||||||| ||||||||||||| ||   ||||||||||||| |||||||||||        ||||||||||||||||| ||||||||||||||||    
T  34404940 cctgtgctaaaaa-cacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggaagggtgcaggtcaact 34404842  T
Q  115 gaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  34404841 gaaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatcc 34404754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 26182741 - 26182555
Alignment:
Q  17 cctgtgctaaaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaact 114  Q
    ||||||||||||| ||||||||||||| ||   |||||||| |||| |||||||||||       ||| |||||||||||||||||||||||||||||||    
T  26182741 cctgtgctaaaaa-cacgcagcttgaccaacaagaataaagacgtggattccttaaataaaatggtgcatgcgtaaaacaaggcagggtgcaggtcaact 26182643  T
Q  115 gaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||| |||| ||||| ||||||||||||||||    
T  26182642 gaaccatgccaggatgttggcacatcgtgttcaacatctcctatgaatatttgttttaggcaaaagtgaagtcaatatacaaatatcc 26182555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 27 - 202
Target Start/End: Complemental strand, 17920285 - 17920109
Alignment:
Q  27 aaaacacgcagcttgactaagga--ataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtc 124  Q
    ||||||||||||||||| ||  |  ||||||||||| |||||||||||        ||||||  ||||||||||||| |||||||||||||||||||| |    
T  17920285 aaaacacgcagcttgaccaacaacaataaaggcgtggattccttaaataaaatagcgcgtgctaaaaacaaggcagg-tgcaggtcaactgaaccatgcc 17920187  T
Q  125 aggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  17920186 aggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatcc 17920109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 20497650 - 20497472
Alignment:
Q  26 aaaaacacgcagcttgacta--aggaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgt 123  Q
    |||||||||||||||||| |  | ||||||||||||| |||||||||||        | |||||||||||||||||||||||||||||||||||||||      
T  20497650 aaaaacacgcagcttgaccatcaagaataaaggcgtggattccttaaataaaatagcgagtgcgtaaaacaaggcagggtgcaggtcaactgaaccatac 20497551  T
Q  124 caggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    || |||||||||||||| ||| ||||||||||||||||||||| ||||||| |||| ||||| ||||||| ||||||||    
T  20497550 caagatgttggcacatcttgtacaacatctcacatgaatatttattttaggcaaaagtgaagccaatataaaaatatcc 20497472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 7897357 - 7897237
Alignment:
Q  81 gcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaa 180  Q
    ||||||||||||| ||| | |||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||     
T  7897357 gcgtgcgtaaaactaggtaaggtgcaggtcaactgaac-atgccaggatgttgacacatcgtgttcaacatctcacatgaatatttgttttaggcaaaag 7897259  T
Q  181 tgaagacaatatacaaatatcc 202  Q
    ||| | ||||||||||||||||    
T  7897258 tgacgccaatatacaaatatcc 7897237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 20287221 - 20287399
Alignment:
Q  26 aaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgt 123  Q
    ||||||||| |||||||| ||   |||||||| |||| |||||||||||        ||||||| |||||||||||||||| |||||||||||||||||     
T  20287221 aaaaacacgtagcttgaccaacaagaataaagacgtggattccttaaataaaatagcgcgtgcgaaaaacaaggcagggtggaggtcaactgaaccatgc 20287320  T
Q  124 caggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||||||||||  ||||||||||||||  ||||||||| |||||   |||| ||||| ||| ||||||||||||    
T  20287321 caggatgttggcacattatgttcaacatctcatttgaatatttattttatacaaaagtgaagccaacatacaaatatcc 20287399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 17660836 - 17660763
Alignment:
Q  128 atgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||| ||||||| | |||||||   ||||||||||||||||| | || ||||||| ||||||||||||||||    
T  17660836 atgttggaacatcgtatccaacatcatgcatgaatatttgtttta-gcaataatgaagccaatatacaaatatcc 17660763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 20740358 - 20740282
Alignment:
Q  125 aggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||||| |||| || | ||||||| ||||||||||||||||||| | |||||||||| ||| | | ||||||||    
T  20740358 aggatgttggaacattgtatccaacatcacacatgaatatttgtttta-gcaaaaatgaagtcaacacataaatatcc 20740282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 12560721 - 12560535
Alignment:
Q  17 cctgtgctaaaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaact 114  Q
    ||||||||||||| || |||||||||||||   ||||||||| ||| |||||||||||        |||||||||||||||||||||||| |||||||||    
T  12560721 cctgtgctaaaaa-caagcagcttgactaacaagaataaaggtgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtggaggtcaact 12560623  T
Q  115 gaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  12560622 gaaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagtcaatatacaaatatcc 12560535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 30226720 - 30226906
Alignment:
Q  17 cctgtgctaaaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaact 114  Q
    ||||||||||||| ||||||||||||| ||   ||||||||||||| |||||||||||        || |||||||||||||||||||||||||||||||    
T  30226720 cctgtgctaaaaa-cacgcagcttgaccaacaagaataaaggcgtggattccttaaatataatagcgcatgcgtaaaacaaggcagggtgcaggtcaact 30226818  T
Q  115 gaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  30226819 gaatcatgccaggatgttggcacatcgtgtccaacatctcccatgaatatttgttttaggcaaaagtgaagccaatatacaaatatcc 30226906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 3285742 - 3285622
Alignment:
Q  82 cgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaat 181  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |    
T  3285742 cgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgccaggatgttggcatatcgtgttcaacatctcacataaatatttgttttaggcaaaagt 3285643  T
Q  182 gaagacaatatacaaatatcc 202  Q
    |||| ||||||||||||||||    
T  3285642 gaagtcaatatacaaatatcc 3285622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 48797126 - 48796942
Alignment:
Q  17 cctgtgctaaaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaact 114  Q
    ||||||||||||| || |||||||||| ||   ||||||||||||| |||||||||||        ||||||||||||||||||||||||||||||||||    
T  48797126 cctgtgctaaaaa-catgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaggtcaact 48797028  T
Q  115 gaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||| ||||||||||||||||||||||||||||||  ||||||||||| ||||||| |||| ||||| ||||||||||||||||    
T  48797027 gaaccatgccaggatgttggcacatcgtgttcaacatct--catgaatatttattttaggcaaaagtgaagccaatatacaaatatcc 48796942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 14976084 - 14976268
Alignment:
Q  17 cctgtgctaaaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaact 114  Q
    ||||||||||||| ||||||||||||| ||   ||||||||||||| |||||||||||        |||||||||||||||||||||||||| |||||||    
T  14976084 cctgtgctaaaaa-cacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaagtcaact 14976182  T
Q  115 gaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
     ||||||| |||||| |||||||||||||||||||||||| |  |||||||||||||||| |||| ||||| ||||||||||||||||    
T  14976183 aaaccatgccaggatattggcacatcgtgttcaacatctctc--gaatatttgttttaggaaaaagtgaagccaatatacaaatatcc 14976268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 15405560 - 15405744
Alignment:
Q  17 cctgtgctaaaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaact 114  Q
    ||||||||||||| ||||||||||||| ||   ||||||||||||| |||||||||||        |||||||||||||||||||||||||| |||||||    
T  15405560 cctgtgctaaaaa-cacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaagtcaact 15405658  T
Q  115 gaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
     ||||||| |||||| |||||||||||||||||||||||| |  |||||||||||||||| |||| ||||| ||||||||||||||||    
T  15405659 aaaccatgccaggatattggcacatcgtgttcaacatctctc--gaatatttgttttaggaaaaagtgaagccaatatacaaatatcc 15405744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 81 - 200
Target Start/End: Original strand, 7620798 - 7620917
Alignment:
Q  81 gcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaa 180  Q
    ||||||||||||||||||||| |||| |||||| ||||| || |||||||||| ||||||||||| |||||||||||||||||||| ||||||| |||||    
T  7620798 gcgtgcgtaaaacaaggcaggatgcatgtcaaccgaaccttgccaggatgttgacacatcgtgtttaacatctcacatgaatatttattttaggcaaaaa 7620897  T
Q  181 tgaagacaatatacaaatat 200  Q
    ||||| ||||||||||||||    
T  7620898 tgaagccaatatacaaatat 7620917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 11560002 - 11559824
Alignment:
Q  26 aaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgt 123  Q
    |||| ||||||||||||| ||   ||||||||||||| |||||||||||        ||||||| ||||||||||| | |  ||||||||| |||||||     
T  11560002 aaaagcacgcagcttgaccaacaagaataaaggcgtggattccttaaataaataaacgcgtgcgaaaaacaaggcaagctataggtcaactaaaccatgc 11559903  T
Q  124 caggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||| |||| ||||||||| ||||||||||| ||||||||||||||||| |||||||| | ||| || |||||||||    
T  11559902 caggatattggaacatcgtgtccaacatctcacttgaatatttgttttaggcaaaaatgaggccaacattcaaatatcc 11559824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 11629358 - 11629464
Alignment:
Q  83 gtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatg 182  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||             ||||||||||||||||||||||||||||| |||| ||    
T  11629358 gtgcgtaaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgtt-------------caacatctcacatgaatatttgttttaggcaaaagtg 11629444  T
Q  183 aagacaatatacaaatatcc 202  Q
    ||| ||||||||||||||||    
T  11629445 aagccaatatacaaatatcc 11629464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 4542052 - 4541991
Alignment:
Q  112 actgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttag 173  Q
    ||||||||||| ||||||||||| |||| |||| ||||||| ||| ||||||||||||||||    
T  4542052 actgaaccatgccaggatgttggaacatggtgtccaacatcacacttgaatatttgttttag 4541991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 42783537 - 42783612
Alignment:
Q  127 gatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||| |||| |||||| |||||| |  ||||||||||||||||| |||| ||||| ||| ||||||||||||    
T  42783537 gatgttggaacattgtgttccacatctgaagtgaatatttgttttaggcaaaagtgaagccaacatacaaatatcc 42783612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 9567674 - 9567722
Alignment:
Q  125 aggatgttggcacatcgtgttcaacatctcacatgaatatttgttttag 173  Q
    |||||||||| ||||||| | ||||||| ||||||||||||||||||||    
T  9567674 aggatgttggaacatcgtatccaacatcacacatgaatatttgttttag 9567722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 4793971 - 4793897
Alignment:
Q  127 gatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||| ||||||| | ||||||| ||||||||||||||||||| | |||| ||||| ||| | ||||||||||    
T  4793971 gatgttggaacatcgtatccaacatcacacatgaatatttgtttta-gcaaaagtgaagccaacacacaaatatcc 4793897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 11085158 - 11084980
Alignment:
Q  26 aaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgt 123  Q
    |||||||||||||||||| ||   |||| |||||||| |||||||||||        ||||||||||||||||||||||||||||| ||||||||||||     
T  11085158 aaaaacacgcagcttgaccaacaagaattaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaggttaactgaaccatgc 11085059  T
Q  124 caggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||    
T  11085058 caggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatataaatatcc 11084980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 33063037 - 33063223
Alignment:
Q  17 cctgtgctaaaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaact 114  Q
    ||||||||||||  ||||||||||||| ||   ||||||||||||| ||| |||||||        ||||||||||||||||||| ||||||||||||||    
T  33063037 cctgtgctaaaat-cacgcagcttgaccaacaagaataaaggcgtggatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtgcaggtcaact 33063135  T
Q  115 gaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||  |||||||||||||||    
T  33063136 gaaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatcc 33063223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 45598829 - 45598651
Alignment:
Q  26 aaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgt 123  Q
    |||||||||||||||||| ||   ||||||||||||| |||||||||||        | |||||||||||||| |||||||||||||||||||||||||     
T  45598829 aaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaacagcgtgtgcgtaaaacaagacagggtgcaggtcaactgaaccatgc 45598730  T
Q  124 caggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||  ||||| |||||||||    
T  45598729 caggatgttggcacatcgtgttcaacatctcacataaatatttgttttagccaaaaatgaagctaatattcaaatatcc 45598651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 52436259 - 52436137
Alignment:
Q  80 tgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaa 179  Q
    |||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  52436259 tgcgtgcgtaaaacaaggcaaggtgcaggtcaactgaaccatgcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaa 52436160  T
Q  180 atgaagacaatatacaaatatcc 202  Q
    |  ||| ||||||||||||||||    
T  52436159 acaaagccaatatacaaatatcc 52436137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 40312659 - 40312544
Alignment:
Q  87 gtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaaga 186  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||  ||||||| |||| |||||     
T  40312659 gtaaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgttggcacatcttgtacaacatctcacatgaatattaattttaggcaaaagtgaagc 40312560  T
Q  187 caatatacaaatatcc 202  Q
    |||| |||||||||||    
T  40312559 caatctacaaatatcc 40312544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 17038982 - 17039068
Alignment:
Q  116 aaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  17038982 aaccatgcctggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatcc 17039068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 8282691 - 8282752
Alignment:
Q  112 actgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttag 173  Q
    |||||||  |||||||||||||| ||||||| | |||||||  |||||| ||||||||||||    
T  8282691 actgaactgtgtcaggatgttggaacatcgtatccaacatcatacatgagtatttgttttag 8282752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 8730647 - 8730768
Alignment:
Q  81 gcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaa 180  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||     
T  8730647 gcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgccaggatgttgtcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaag 8730746  T
Q  181 tgaagacaatatacaaatatcc 202  Q
    ||||| ||||||||||||||||    
T  8730747 tgaagtcaatatacaaatatcc 8730768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 37155022 - 37154846
Alignment:
Q  26 aaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgt 123  Q
    |||||||||||||||||| ||   |||||||| |||||||||||||||         ||||||||||||||| ||||||||||||||||||||||||||     
T  37155022 aaaaacacgcagcttgaccaacaagaataaagacgtgaattccttaaaaaaatagc-gcgtgcgtaaaacaacgcagggtgcaggtcaactgaaccatgc 37154924  T
Q  124 caggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||| ||||||||| ||||||    
T  37154923 caggatgttggcacatcgtgttcaacatct-gcattaatatttgttttaggtaaaaatgaagccaatatacatatatcc 37154846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 17880180 - 17880059
Alignment:
Q  81 gcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaa 180  Q
    ||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||| ||||     
T  17880180 gcgtgcgtaaaacaaggcaaggtgcaggtcaactgaaccatgccaagatgttggcacatcgtgttcaacatctcacatgcatatttgttttaggcaaaag 17880081  T
Q  181 tgaagacaatatacaaatatcc 202  Q
    ||||| ||||||||||| ||||    
T  17880080 tgaagccaatatacaaagatcc 17880059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 39081590 - 39081744
Alignment:
Q  48 gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttca 147  Q
    ||||||||||||| |||||||||||        || ||||||||||||||||||||||||||||||| |||||||||||||||||| |||  ||||||||    
T  39081590 gaataaaggcgtggattccttaaataaaatagcgcatgcgtaaaacaaggcagggtgcaggtcaactaaaccatgtcaggatgttgacacgccgtgttca 39081689  T
Q  148 acatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||||    
T  39081690 acatctcacatgaatatttattttaggcaaaagtgaagccaatatacaaatatcc 39081744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 18676508 - 18676626
Alignment:
Q  82 cgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaat 181  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |    
T  18676508 cgtgcgtaaaacaaggcagggt-caggtcaactgaaccatgccaggatgttggcacatcgtgctcaacatctcacatgaatatttgttttaggcaaaagt 18676606  T
Q  182 gaagacaatatacaaatatc 201  Q
    |||  |||||||||||||||    
T  18676607 gaaatcaatatacaaatatc 18676626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 33465635 - 33465482
Alignment:
Q  48 gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttca 147  Q
    |||||||||| || |||||||||||       |||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||    
T  33465635 gaataaaggcatggattccttaaataaaataatgcgtgcgaaaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgttggcacatcgtgtcca 33465536  T
Q  148 acatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||| ||||||||| ||||||| |||| ||||| ||| ||||||||||||    
T  33465535 acatctcacttgaatattt-ttttaggcaaaagtgaagccaacatacaaatatcc 33465482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 17280539 - 17280725
Alignment:
Q  17 cctgtgctaaaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaact 114  Q
    ||||||||||||| ||||||||||| | ||   ||||||||| ||| |||||||||||        ||||||| ||||||||||| ||| || |||||||    
T  17280539 cctgtgctaaaaa-cacgcagcttggccaacaagaataaaggggtggattccttaaataaaatagcgcgtgcgaaaaacaaggcaaggtacaagtcaact 17280637  T
Q  115 gaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||| || ||||||| |||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  17280638 gaaccatgccatgatgttgacacatcttgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatcc 17280725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 22876735 - 22876853
Alignment:
Q  82 cgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaat 181  Q
    |||||| ||||||||||| ||||||| |||||||||||||| ||||||||||| ||||| ||| ||||||||||| | ||||||||||||||| |||| |    
T  22876735 cgtgcgaaaaacaaggcaaggtgcagatcaactgaaccatgccaggatgttgggacatcttgtccaacatctcacttaaatatttgttttaggcaaaagt 22876834  T
Q  182 gaagacaatatacaaatat 200  Q
    |||| ||| ||| ||||||    
T  22876835 gaagccaacatataaatat 22876853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 23250488 - 23250545
Alignment:
Q  112 actgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgtt 169  Q
    ||||||||||| ||||||||||| ||||||||| ||| ||| ||| ||||||||||||    
T  23250488 actgaaccatgccaggatgttggaacatcgtgtccaatatcacacttgaatatttgtt 23250545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 16137079 - 16136901
Alignment:
Q  26 aaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgt 123  Q
    ||||||||||| |||||| ||   ||||||||||||| |||||||||||       |||||  |||||||||||||| |||||||||||||||||||||     
T  16137079 aaaaacacgcaacttgaccaacaagaataaaggcgtgcattccttaaataaaatagtgcgtctgtaaaacaaggcagagtgcaggtcaactgaaccatga 16136980  T
Q  124 caggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||    
T  16136979 caggatgttggcacatcgtgttcaacatctcacatgaatatttgtttttggcaaaagtgaagccaatatacaaatatcc 16136901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 19216606 - 19216792
Alignment:
Q  17 cctgtgctaaaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaact 114  Q
    ||||||||||||| ||||||||||||| ||   |||||||||||||  ||||||||||        |||||||||||| |||||||||||||||||||||    
T  19216606 cctgtgctaaaaa-cacgcagcttgaccaacaagaataaaggcgtgggttccttaaataaaatagcgcgtgcgtaaaataaggcagggtgcaggtcaact 19216704  T
Q  115 gaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
     ||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||| ||||||||||    
T  19216705 taaccatgccaggatattggcacatcgtgttcaacatctcacatgaatatttattttaggcaaaagtgaagccaatagacaaatatcc 19216792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 202
Target Start/End: Original strand, 20003803 - 20003921
Alignment:
Q  84 tgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatga 183  Q
    |||||||||||||||| |||||| ||||||| |||||||  ||||||||| |||||||||||||||||| ||||||||||||| ||||||| |||| |||    
T  20003803 tgcgtaaaacaaggcaaggtgcaagtcaactaaaccatgctaggatgttgacacatcgtgttcaacatcccacatgaatatttcttttaggcaaaagtga 20003902  T
Q  184 agacaatatacaaatatcc 202  Q
    || ||||||||||||||||    
T  20003903 agccaatatacaaatatcc 20003921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 9385298 - 9385452
Alignment:
Q  48 gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttca 147  Q
    ||||||||||||| |||||||||||       ||| |||| ||||||||||| ||| ||||||||||||||||||   ||||||||||||||||||| ||    
T  9385298 gaataaaggcgtggattccttaaataaactagtgcatgcgaaaaacaaggcaaggtccaggtcaactgaaccatgcagggatgttggcacatcgtgtcca 9385397  T
Q  148 acatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||| ||||||||||||||| | |||| ||||  ||||||||||||||||    
T  9385398 acatctcacttgaatatttgttttaagcaaaagtgaatccaatatacaaatatcc 9385452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 15002602 - 15002481
Alignment:
Q  81 gcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaa 180  Q
    ||||||| |||||||||||  ||||||||||||||||||||| || |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  15002602 gcgtgcgaaaaacaaggcaatgtgcaggtcaactgaaccatgccacgatgttggcacatcgtgtccaacatctcacttgaatatttgttttaggcaaaaa 15002503  T
Q  181 tgaagacaatatacaaatatcc 202  Q
     |||  ||| ||||||||||||    
T  15002502 agaaaccaacatacaaatatcc 15002481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 32452671 - 32452825
Alignment:
Q  48 gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttca 147  Q
    ||||||||||||| |||||||||||        ||||| | ||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||| ||    
T  32452671 gaataaaggcgtggattccttaaataaaataacgcgtgggaaaaacaaggcaagatgcatgtcaactgaaccatgccaggatgttggcacatcgtgtcca 32452770  T
Q  148 acatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||| ||||||||| ||||||| |||| ||||| ||| ||||||||||||    
T  32452771 acatctcacttgaatatttattttaggcaaaagtgaaggcaacatacaaatatcc 32452825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 12444141 - 12444067
Alignment:
Q  128 atgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||| |||| ||||| ||||||||||||||||    
T  12444141 atgttggcacatcatgttcaacatctcacatgaatattcgttttaggcaaaagtgaagccaatatacaaatatcc 12444067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 8749699 - 8749877
Alignment:
Q  26 aaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgt 123  Q
    |||||||||||||||||| ||   ||||||||||||| |||||||||||        || |||||||||||||||| |||||| |||||||||||||||     
T  8749699 aaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagagcatgcgtaaaacaaggcaaggtgcaagtcaactgaaccatgc 8749798  T
Q  124 caggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  8749799 caggatgttggcacatcatgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatcc 8749877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 9037365 - 9037543
Alignment:
Q  26 aaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgt 123  Q
    |||||||||||||||||| ||   ||||||||||||| |||||||||||       |||||||||||||||||||| |||||| |||||||||||||||     
T  9037365 aaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagtgcgtgcgtaaaacaaggcaaggtgcacgtcaactgaaccatgc 9037464  T
Q  124 caggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||  |||| |||||||||||    
T  9037465 caggatgttggcacatcgtgttcaacatctcacatgaatatttgtttgaggcaaaagtgaaaccaatgtacaaatatcc 9037543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 9030863 - 9030742
Alignment:
Q  81 gcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaa 180  Q
    |||||| |||||| || ||| |||||| |||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||     
T  9030863 gcgtgcataaaacgagacagtgtgcagatcaactgaaccatgccaggatgttgacacatcgtgttcaatatctcacatgaatatttgttttaggcaaaag 9030764  T
Q  181 tgaagacaatatacaaatatcc 202  Q
    ||||| ||||||| ||||||||    
T  9030763 tgaagccaatatataaatatcc 9030742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 11560888 - 11560812
Alignment:
Q  126 ggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| | |||| ||||| ||||||||||| ||||    
T  11560888 ggatgttggcacatcgtgttcaacatctcacatgaatattcgttttaagcaaaagtgaagccaatatacaaacatcc 11560812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 7478560 - 7478512
Alignment:
Q  125 aggatgttggcacatcgtgttcaacatctcacatgaatatttgttttag 173  Q
    |||||||||| ||||||| | ||||||| ||||||||||||||||||||    
T  7478560 aggatgttggaacatcgtatccaacatcacacatgaatatttgttttag 7478512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 13920287 - 13920335
Alignment:
Q  125 aggatgttggcacatcgtgttcaacatctcacatgaatatttgttttag 173  Q
    |||||||| | ||||||| | ||||||| ||||||||||||||||||||    
T  13920287 aggatgttagaacatcgtatccaacatcacacatgaatatttgttttag 13920335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 18606036 - 18605917
Alignment:
Q  83 gtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatg 182  Q
    ||||||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  18606036 gtgcgtaaaacaaggtagggtgcaggtcaattgaactatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtg 18605937  T
Q  183 aagacaatatacaaatatcc 202  Q
    ||| ||||||||||||||||    
T  18605936 aagccaatatacaaatatcc 18605917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 18766395 - 18766516
Alignment:
Q  81 gcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaa 180  Q
    ||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||     
T  18766395 gcgtgcgtaaaacaaggtaaggtgcaggtcaactgaaccatggcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaag 18766494  T
Q  181 tgaagacaatatacaaatatcc 202  Q
    ||||| ||||||||||||||||    
T  18766495 tgaagtcaatatacaaatatcc 18766516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 29566696 - 29566850
Alignment:
Q  48 gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttca 147  Q
    ||||||||||||| |||||||||||        ||||||| |||||||||||  ||||||||||||||||||||| |||||||||||||||| |||| ||    
T  29566696 gaataaaggcgtggattccttaaataaaataacgcgtgcgaaaaacaaggcaatgtgcaggtcaactgaaccatgccaggatgttggcacattgtgtcca 29566795  T
Q  148 acatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||| ||||||||||||||||| |||| ||||| ||| ||| ||||||||    
T  29566796 acatctcacttgaatatttgttttaggcaaaagtgaagccaacatataaatatcc 29566850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 13314399 - 13314286
Alignment:
Q  89 aaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagaca 188  Q
    ||||||||||| |||||||||||||||||||||  || |||||||||||||| ||| ||||||||||| ||||||||||||||||| |||| ||||| ||    
T  13314399 aaaacaaggcaaggtgcaggtcaactgaaccattccaagatgttggcacatcatgtccaacatctcacttgaatatttgttttaggcaaaagtgaagcca 13314300  T
Q  189 atatacaaatatcc 202  Q
    | ||||||||||||    
T  13314299 acatacaaatatcc 13314286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 20068870 - 20068788
Alignment:
Q  129 tgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcctaccgtaga 211  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||  |||| ||||| |||||||||||||||| || |||||    
T  20068870 tgttggcacatcgttttcaacatctcacataaatatttgttttagacaaaagtgaagccaatatacaaatatccaacagtaga 20068788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 27108214 - 27108303
Alignment:
Q  112 actgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||| || ||||||||||| ||||||| | |||||||    |||||||||| ||||| | || ||||||| ||||||||||||||||    
T  27108214 actgaaccgtgccaggatgttggaacatcgtatccaacatcatgtatgaatatttatttta-gaaataatgaagtcaatatacaaatatcc 27108303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 16470 - 16292
Alignment:
Q  26 aaaaacacgcagcttgactaag--gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgt 123  Q
    |||||||||||||||||| ||   |||||||| |||| |||||||||||        |||||||||||| |||||||||||||||| || |||||||||     
T  16470 aaaaacacgcagcttgaccaacaagaataaagacgtgcattccttaaataaaatagcgcgtgcgtaaaataaggcagggtgcaggttaattgaaccatgc 16371  T
Q  124 caggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||||    
T  16370 taggatgttggcacatcgtgttcaacatctcacatgaatatttattttaggcaaaagtgaagccaatatacaaatatcc 16292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 36981 - 37135
Alignment:
Q  48 gaataaaggcgtgaattccttaaatnnnnnnntgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttca 147  Q
    |||||||||| || |||||||||||       |||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||    
T  36981 gaataaaggcatggattccttaaataaaataatgcgtgcgaaaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgttggcacatcgtgtcca 37080  T
Q  148 acatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||| |||||  || ||||||| |||| ||||| ||| ||||||||||||    
T  37081 acatctcacttgaattatttttttaggcaaaagtgaagccaacatacaaatatcc 37135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 3884 - 3958
Alignment:
Q  128 atgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  3884 atgttggtacatcgtcttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatcc 3958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0645 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0645
Description:

Target: scaffold0645; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 1807 - 1883
Alignment:
Q  126 ggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| | |||| ||||| ||||||||||| ||||    
T  1807 ggatgttggcacatcgtgttcaacatctcacatgaatattcgttttaagcaaaagtgaagccaatatacaaacatcc 1883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 103631 - 103744
Alignment:
Q  89 aaaacaaggcagggtgcaggtcaactgaaccatgtcaggatgttggcacatcgtgttcaacatctcac-atgaatatttgttttaggtaaaaatgaagac 187  Q
    ||||||||||| |||||||||||||||||||||| |||||||| || || || | | |||||||||||  ||||||||||||||||| |||| ||||| |    
T  103631 aaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgtaggaacgtcatatccaacatctcactttgaatatttgttttaggcaaaagtgaagcc 103730  T
Q  188 aatatacaaatatc 201  Q
    || || ||||||||    
T  103731 aacattcaaatatc 103744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 5738 - 5827
Alignment:
Q  112 actgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||||| ||||||||||| ||||| | | |||||||  | |||||||||||||||||| |||| |||||  ||||| |||||||||    
T  5738 actgaaccatgccaggatgttggaacatcatatccaacatcatatatgaatatttgttttagg-aaaagtgaagctaatattcaaatatcc 5827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 11993 - 12054
Alignment:
Q  112 actgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttag 173  Q
    ||||||||||| ||||||||||| ||||| | | |||||||  | |||||||||||||||||    
T  11993 actgaaccatgccaggatgttggaacatcatatccaacatcatatatgaatatttgttttag 12054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 45356 - 45267
Alignment:
Q  112 actgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    ||||||||||| || |||||||| ||||||| | |||||||  |||||||||||||||||| | |||| ||||| ||| | ||||||||||    
T  45356 actgaaccatgccaagatgttggaacatcgtatccaacatcatacatgaatatttgtttta-gaaaaagtgaagtcaacacacaaatatcc 45267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 50285 - 50209
Alignment:
Q  125 aggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||||| ||||||| | ||||||| ||||||||||||||||||| | |||| ||||| ||| | ||||||||||    
T  50285 aggatgttggaacatcgtatccaacatcacacatgaatatttgtttta-gcaaaagtgaagccaacacacaaatatcc 50209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0480 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 11951 - 12040
Alignment:
Q  112 actgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaaatgaagacaatatacaaatatcc 202  Q
    |||||||| || ||||||||||  ||||||||| ||||||| ||| ||| ||||||||||| | |||| || || ||| ||||||||||||    
T  11951 actgaaccgtgccaggatgttgaaacatcgtgtccaacatcacacttgattatttgtttta-gcaaaagtgcagtcaacatacaaatatcc 12040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University