View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3751_low_2 (Length: 476)
Name: NF3751_low_2
Description: NF3751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3751_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Complemental strand, 6916912 - 6916470
Alignment:
| Q |
17 |
cattgataagtgaacaaaaatctaaactagctgaacaatgtatgatagaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatat |
116 |
Q |
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| T |
6916912 |
cattgataagtgaacaaaaatctaaactagctgaacaatgtatgatagaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatat |
6916813 |
T |
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| Q |
117 |
atgataaatttaatattaaatcaagtttcccaataaaaacattggagtgacaccaaattgtacactatcacaattatagctactttttatttgctttcaa |
216 |
Q |
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| T |
6916812 |
atgataaatttaatgttaaatcaagtttcccaataaaaacattggagtgacaccaaattgtacactatcacaattatagctactttttatttgctttcaa |
6916713 |
T |
|
| Q |
217 |
aattttgttgacccnnnnnnntgaaccaaaactacaattcttttttctagataactacccccaataaatttaggaccgtgtacttgaaaggccatatcat |
316 |
Q |
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| T |
6916712 |
aattttgttgacccaaaaaaatgaaccaaaaccacaattcttttttccagataactacccccaaaaaatttaggaccgtgtacttgaaaggccatatcat |
6916613 |
T |
|
| Q |
317 |
tcagctgccttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttc |
416 |
Q |
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| T |
6916612 |
tcagctgccttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttc |
6916513 |
T |
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| Q |
417 |
cctgtgtcatcgaacgaatagccgtagaatacccaaacatatt |
459 |
Q |
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| T |
6916512 |
cctgtgtcatcgaacgaatagccgtagaatacccaaacatatt |
6916470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 15035941 - 15036049
Alignment:
| Q |
312 |
atcattcagctgccttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcacc |
411 |
Q |
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||||||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
15035941 |
atcattcaggtgccttattgcccttgtatgcgtttaccaattgggtctgtacatcatgagaaacaggtgaatgttccttatattccattgtaaattcacc |
15036040 |
T |
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| Q |
412 |
ctttccctg |
420 |
Q |
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| T |
15036041 |
ctttccctg |
15036049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 459
Target Start/End: Original strand, 15036138 - 15036180
Alignment:
| Q |
417 |
cctgtgtcatcgaacgaatagccgtagaatacccaaacatatt |
459 |
Q |
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| T |
15036138 |
cctgtgtcatcgaacgaagagctgtagagtacccaaacatatt |
15036180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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