View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3751_low_5 (Length: 335)

Name: NF3751_low_5
Description: NF3751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3751_low_5
NF3751_low_5
[»] chr8 (2 HSPs)
chr8 (10-188)||(4961447-4961626)
chr8 (157-225)||(39162165-39162234)
[»] chr4 (4 HSPs)
chr4 (29-103)||(37826024-37826098)
chr4 (59-103)||(50674790-50674834)
chr4 (158-213)||(14623392-14623447)
chr4 (157-206)||(49437660-49437709)
[»] chr2 (1 HSPs)
chr2 (158-210)||(14505567-14505619)
[»] chr3 (4 HSPs)
chr3 (157-221)||(32676164-32676229)
chr3 (157-199)||(55260498-55260540)
chr3 (157-198)||(42139646-42139687)
chr3 (166-198)||(40139085-40139117)
[»] scaffold0005 (1 HSPs)
scaffold0005 (158-213)||(193936-193991)
[»] chr6 (1 HSPs)
chr6 (176-211)||(3649930-3649965)
[»] chr1 (2 HSPs)
chr1 (180-225)||(20791618-20791663)
chr1 (160-219)||(34856621-34856681)
[»] chr7 (1 HSPs)
chr7 (229-265)||(47732396-47732432)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 4961447 - 4961626
Alignment:
Q  10 gcaaaggcataagttaacaagtccactgaaattagagaacaacccttatttttccttccaaaatgcataaactcatcatattaatttaccatatcattta 109  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  4961447 gcaaaggcagaagttaacaagtccactgaaattagaggacaactcttatttttgcttccaaaatgcataaactcatcagattaatttaccatatcattta 4961546  T
Q  110 aaatagtttcaagcagtg---acaaaatacattcagaactcaatccagtcggggggataggtagctcatttggttgagctaa 188  Q
    ||||||||||||| ||||   ||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  4961547 aaatagtttcaagtagtgacaacaaaatacattcagaact-aatccagtc-aggggataggtagctcatttggttgagctaa 4961626  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 39162165 - 39162234
Alignment:
Q  157 ggggggataggtagctcatttggttgagctaagggattaaaggaggtaagaag-taaaggtccaaggttc 225  Q
    |||||||| ||||||||||||||||||||||||||| ||||| || |||| || |||||||||| |||||    
T  39162165 ggggggatgggtagctcatttggttgagctaagggactaaagtagataaggagttaaaggtccagggttc 39162234  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 37826024 - 37826098
Alignment:
Q  29 agtccactgaaattagagaacaac-ccttatttttccttccaaaatgcataaactcatcatattaatttaccatat 103  Q
    |||||||||||||||||||||||  ||||||||||||||| || |||||||| ||||||| |||||||||||||||    
T  37826024 agtccactgaaattagagaacaaaaccttatttttccttc-aatatgcataacctcatcaaattaatttaccatat 37826098  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 50674834 - 50674790
Alignment:
Q  59 ttttccttccaaaatgcataaactcatcatattaatttaccatat 103  Q
    ||||||||| ||||||||||||||||| | |||||||||||||||    
T  50674834 ttttccttcaaaaatgcataaactcattagattaatttaccatat 50674790  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 14623392 - 14623447
Alignment:
Q  158 gggggataggtagctcatttggttgagctaagggattaaaggaggtaagaagtaaa 213  Q
    |||||||  ||| |||| ||||||||||||||||||||||||||| ||| ||||||    
T  14623392 gggggatgagtatctcacttggttgagctaagggattaaaggaggaaaggagtaaa 14623447  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 49437660 - 49437709
Alignment:
Q  157 ggggggataggtagctcatttggttgagctaagggattaaaggaggtaag 206  Q
    |||||||||||||||||| ||||||||| || | ||||||||||| ||||    
T  49437660 ggggggataggtagctcacttggttgagttacgagattaaaggagttaag 49437709  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 14505619 - 14505567
Alignment:
Q  158 gggggataggtagctcatttggttgagctaagggattaaaggaggtaagaagt 210  Q
    ||||||||| |||||||||||||||||||||||||||||| ||| ||| ||||    
T  14505619 gggggatagatagctcatttggttgagctaagggattaaatgagttaacaagt 14505567  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 32676164 - 32676229
Alignment:
Q  157 ggggggataggtagctcatttggttgagctaagggattaaaggaggtaa-gaagtaaaggtccaag 221  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||| ||| ||  ||||||||||||    
T  32676164 ggggggatgggtagttcatttggttgagctatgggattaaaggagttaacgagttaaaggtccaag 32676229  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 55260540 - 55260498
Alignment:
Q  157 ggggggataggtagctcatttggttgagctaagggattaaagg 199  Q
    |||||||| | ||||||| ||||||||||||||||||||||||    
T  55260540 ggggggatggttagctcacttggttgagctaagggattaaagg 55260498  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 42139687 - 42139646
Alignment:
Q  157 ggggggataggtagctcatttggttgagctaagggattaaag 198  Q
    |||||||| ||| ||||| |||||||||||||||||||||||    
T  42139687 ggggggatgggttgctcacttggttgagctaagggattaaag 42139646  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 40139085 - 40139117
Alignment:
Q  166 ggtagctcatttggttgagctaagggattaaag 198  Q
    ||||||||| |||||||||||||||||||||||    
T  40139085 ggtagctcacttggttgagctaagggattaaag 40139117  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 193991 - 193936
Alignment:
Q  158 gggggataggtagctcatttggttgagctaagggattaaaggaggtaagaagtaaa 213  Q
    |||||||  ||| |||| ||||||||||||||||||||||||||| ||| ||||||    
T  193991 gggggatgagtatctcacttggttgagctaagggattaaaggaggaaaggagtaaa 193936  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 3649965 - 3649930
Alignment:
Q  176 ttggttgagctaagggattaaaggaggtaagaagta 211  Q
    |||||||||||||||||| |||||||||||||||||    
T  3649965 ttggttgagctaagggataaaaggaggtaagaagta 3649930  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 20791663 - 20791618
Alignment:
Q  180 ttgagctaagggattaaaggaggtaagaagtaaaggtccaaggttc 225  Q
    ||||||||||||||||||||||||||| ||  |||||||| |||||    
T  20791663 ttgagctaagggattaaaggaggtaaggagcgaaggtccatggttc 20791618  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 34856621 - 34856681
Alignment:
Q  160 gggataggtagctcatttggttgagctaagggattaaaggaggtaagaagt-aaaggtcca 219  Q
    ||||| ||||||||| ||||||||||||| || ||||||||| |||| ||| |||||||||    
T  34856621 gggatgggtagctcaattggttgagctaaaggtttaaaggagttaaggagtgaaaggtcca 34856681  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 47732396 - 47732432
Alignment:
Q  229 tgagaaaatattaacatatcaactaacatttgtcatt 265  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  47732396 tgagaaaatattaacataacaactaacacttgtcatt 47732432  T

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